Castellaniella sp. MT123: ABCV34_06185
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Entry
ABCV34_06185 CDS
T11683
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cast Castellaniella sp. MT123
Pathway
cast03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cast00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABCV34_06185 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cast03021
]
ABCV34_06185 (rho)
03019 Messenger RNA biogenesis [BR:
cast03019
]
ABCV34_06185 (rho)
Transcription machinery [BR:
cast03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ABCV34_06185 (rho)
Messenger RNA biogenesis [BR:
cast03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ABCV34_06185 (rho)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
S1CSD-TOTE-2
AAA_25
UCP018868
Mor
AAA_19
Motif
Other DBs
NCBI-ProteinID:
XAP02396
LinkDB
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Position
1339361..1340617
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AA seq
418 aa
AA seq
DB search
MHLNELKALHVSQLLDMAAGLEIDNASRLRKQELMFAIMKRRAKQGEQVFGDGVLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDTVN
GMQPEAIKHRIMFENLTPLHPDVPMVLERDIKSKENITGRIMDIFAPIGKGQRALIVASP
KSGKTVMMQHIAHAITANYPDAVMIVMLVDERPEEVTEMQRTVRGEVVASTFDEPATRHV
QVAEMVIEKAKRLVELKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNLEEGGSLTIIGTALIETGSRMDEVIYEEFKGTGNSEVHLERRLAEKRIYPAINL
NKSGTRREELLIKPELLQKVWVLRKFIHDMDEVEAMEFILDKIRATKNNAEFFDMMKK
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcacctgaacgaactcaaagcgctgcacgtttcgcagctgctcgacatggccgccggt
ctcgagatcgacaatgccagtcggctgcgcaaacaggaactgatgtttgccatcatgaag
cggcgcgccaaacagggcgaacaggtcttcggcgacggcgtcctggaagtcctgccggac
ggattcggttttctgcgctcgccggaaacgtcctacctggccagcaccgacgacatctat
atttccccctcgcagatccgccgcttcaatctgcacaccggcgattcgatcgagggcgaa
gtccgcaccccgaaagatggcgagcgctattttgccctggtgaaggtcgacacggtcaac
ggcatgcagccggaagcgatcaagcaccggatcatgttcgagaacctcacgccgctgcac
cccgacgtgccgatggtgttggaacgcgacatcaagagcaaggaaaacatcaccgggcgc
atcatggatatcttcgcgcccatcggcaaaggccagcgcgccctgatcgtggccagcccg
aaatcgggcaagaccgtgatgatgcagcatattgcccacgccatcaccgcaaactacccc
gatgcggtgatgatcgtcatgctggttgacgagcgccccgaggaagtcaccgagatgcag
cgcaccgtgcgcggcgaggtcgtcgcctccacgttcgacgaacccgcgacacgacatgtg
caagtcgcggaaatggttatcgagaaggccaagcgcctggttgagttaaaaaaggatgtt
gtcattctgctggattcgatcacccgcttggcacgcgcctataacaccgtggtgccagcg
tcgggcaaggtcctgaccggcggcgtggacgccaacgcgctgcagcgcccgaagcgtttt
ttcggcgcggcacgcaacctcgaggaaggcggttcgctgacgatcatcggcacggccctg
atcgaaaccggcagccggatggacgaggtgatttacgaagaattcaagggcaccggcaat
tccgaagtgcacctcgaacggcgattggccgaaaagcgcatctacccggccatcaacctg
aacaaatccggcacgcgtcgcgaagagctcctgatcaaacccgaacttctacagaaggtc
tgggtgctacgcaagttcatccatgacatggatgaggtcgaagccatggaattcatcctg
gataaaatccgggctaccaaaaacaatgccgaattttttgacatgatgaagaaataa
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