Croceibacter atlanticus: CA2559_00020
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Entry
CA2559_00020 CDS
T01256
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cat
Croceibacter atlanticus
Pathway
cat03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CA2559_00020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cat03021
]
CA2559_00020
03400 DNA repair and recombination proteins [BR:
cat03400
]
CA2559_00020
Enzymes [BR:
cat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CA2559_00020
Transcription machinery [BR:
cat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CA2559_00020
DNA repair and recombination proteins [BR:
cat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CA2559_00020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
EAP87093
UniProt:
A3U4C6
LinkDB
All DBs
Position
complement(28286..32593)
Genome browser
AA seq
1435 aa
AA seq
DB search
MARNNEQNTVKRFNKISIGLASPEAILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGIAKNEDGEALQKLDFLTEEEYLNILETLPQENLY
LEDSDPNKFIAKMGAECLIDLLQRIDLDALSFELRHKANNETSKQRKTEALKRLQVVKAL
RDSNEYRENKPEWMIMKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLV
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTDSNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKLFECGLPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGSPVTVPSQDMVLGLYYMTKGRKHTPEV
PIVGEGLTFYSAEEVVIAYNEKRLNINANIKVRTKDFNEEGELVNQIIETTTGRVIFNME
VPEKAGYINQVLTKKALRDIIGDILKVTSVPETAQFLDRIKSLGYDFAFRGGLSFSLGDI
IIPPEKQQMIDEANEQVEGIRGNYNMGLITFNERYNQVIDIWTATNANLTDLAMSRISTD
QQGFNSVFMMLDSGARGSKEQIRQLTGMRGLMAKPKKSNSGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINETDCGTLRGVEVSPLKKNE
EVVEKLSERIIGRTALNDVINPLTKEVLVEAGVEITDAMAKLIEAAPIESVEVRSALSCE
AKKGICVKCYGRNLATGKTVQMGEAVGVVAAQSIGEPGTQLTLRTFHVGGVAGNISEENK
HIAKFNGVAEIEDLKTVKGENNQGEEADIVISRTTEIKIVDKKTGIVLSTSNVPYGAQIF
VKPGDKVSKDDVLVQWDPFNGVIISEFAGKIKYENLVQGMTYQVETDEQTGFQEKVITES
RDKKKIPTLLIMGKKDEVIRSYNLPVGAHIMVDDGDKIKIGKILVKIPRKSAKAGDITGG
LPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIVESKLGEVKKYLVKLSNQILV
QENDYVRAGMPLSDGSITPEDILNIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVKINDPGDTIFLENQLIHKSDFIEENDAIFGMKVVDDAGDSNNLKPGQIVSPREL
RDENSLLRREDKNLVVAKDAQPATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
SGKVDSLEGLKENVIVGHRIPAGTGMRRYDNIIVGSKEEMNEMVEAKQETEVNYN
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaataatgaacagaatacagtaaagagatttaataaaatctctattggttta
gcttctccagaagcgattttggcagagtcgcgtggtgaggtgttaaaaccagaaactata
aactaccgtacgcacaaaccagagcgagacggtcttttttgcgagcgtatctttggtcct
gtgaaggattacgaatgtgcttgtggaaaatataaaagaatacgctacaaaggtattgtt
tgtgaccgttgtggtgtagaggttacagaaaagaaagtacgtcgtgatcgtgtaggacac
attaatttagttgttcctgtagctcacatttggtacttccgttctttaccaaacaaaata
ggttaccttcttggattgccatctaagaagttagatatgattatatactatgaaaggtat
gtagttatacaaccaggtatcgcaaagaatgaagatggagaagcgttacaaaaattagat
ttccttacagaagaagaatacttaaatattctggaaactcttccacaggaaaacttatac
ttagaagatagtgatccaaacaaattcatcgccaaaatgggtgctgaatgtttaattgat
ttactacaacgtatagatttagatgcactttcttttgaattgcgtcataaggctaacaat
gaaacttctaagcaacgtaaaacagaagcattaaaaagacttcaggttgtaaaagcttta
cgtgattctaatgaataccgtgaaaataaaccagagtggatgataatgaaagtaattccg
gttataccaccagaattacgtccgttagtgcctcttgatggtggtcgttttgcaacttca
gatttaaatgatctttaccgtcgtgttattatacgtaataaccgtcttaagagattagtt
gaaattaaagctccagaagtaattcttagaaatgagaaacgtatgcttcaggaatctgta
gattctttatttgataacacaagaaaatcttcagcagtaaagacagatagtaaccgtcct
ttaaagtcactttcagattcattgaaaggtaagcaaggtcgtttccgtcaaaacctactt
ggtaagcgtgtagattactcagcacgttcagttattgttgtaggaccagaattaaagtta
tttgaatgtggtcttccaaaaaatatggctgcagaactttataagccttttgtaatacgt
aagcttattgagcgcggtattgttaagactgtaaaatctgctaagaagattatagataaa
aaggagcctgtagtttgggatattctggaaaatgtacttaaaggacatccagtattacta
aaccgtgcgcctacgcttcaccgtttaggtattcaagcttttcaacctaaattaattgaa
ggtaaagcaattcaattacacccattggtgtgtacagcatttaacgccgattttgatggt
gatcaaatggcagtacacttaccattaggaccagaagcaattttggaggctcaattatta
atgttggcttctcataatattcttaaccctgcaaatggctcaccagtaacggtaccatct
caggatatggtcttgggtctttactatatgactaaaggaagaaagcatacgcctgaagta
cctattgttggtgaaggcttaactttttattctgcagaagaagtagtaattgcatataac
gaaaaacgtttaaatattaacgcaaatattaaagttagaactaaagactttaatgaagaa
ggcgagcttgttaatcaaattattgagacaacaactggtcgcgtaatatttaatatggag
gttcctgagaaagcaggttacataaaccaagtattaactaagaaggctcttagagatatt
attggtgatattttaaaagtaactagtgttccagaaacggcacaattcttagatagaatt
aaatcattaggttatgactttgcattccgtggtggtctttcattctcattaggtgatatt
attataccgccagagaagcaacagatgattgatgaggcaaatgagcaagttgaaggtatc
cgtggaaactataatatgggtcttataacctttaacgagcgttataaccaagtaattgat
atatggactgctaccaacgctaaccttacagacttggcaatgagccgaattagtacagac
cagcaaggatttaactcagtatttatgatgttagattctggagcgcgtggtagtaaagaa
caaattcgccagttaacaggtatgcgtggtcttatggctaagcctaaaaaatctaactct
ggtggtggtgaaattattgaaaacccaattctttctaactttaaggaaggtctttcaatt
ttagaatattttatctcaactcacggtgcacgtaaaggtcttgccgatacagcacttaaa
acagccgatgctggttacttaactcgtcgtttagttgatgtatcacaagatgtgattatt
aacgaaacagactgtggtaccttgcgtggtgtagaagtttctccattaaagaaaaatgaa
gaagttgttgagaagttaagtgaaagaattattggtcgtacagcattaaacgatgttata
aacccacttactaaagaagtattagtagaagcaggtgtagaaattacagatgctatggct
aagcttattgaagcagcacctattgaaagtgtagaggtaagatctgcattatcttgtgaa
gctaaaaaaggtatttgtgttaaatgttatggtcgtaacctagctactggtaaaacagta
caaatgggtgaagctgtaggtgttgtagcagcacaatctattggtgaacctggtacacag
cttacgctacgtacattccacgttggtggtgttgcgggtaacatttcagaagagaataag
cacattgctaagtttaatggtgttgctgaaattgaagatcttaaaacggtaaaaggagaa
aacaaccaaggcgaagaagctgatattgtaatctctagaactacagagattaagattgta
gataagaagacaggtattgttttaagtactagtaatgttccttatggtgctcaaatattt
gtgaagccaggagacaaagtttctaaagacgatgttttagtacaatgggatccatttaac
ggtgtgattatttctgaatttgctggtaagattaagtatgaaaaccttgtacaaggtatg
acataccaagttgaaacagatgagcaaacaggtttccaagaaaaagtaattacagaatct
cgtgataagaaaaagatacctacgctattaattatgggtaaaaaggatgaagttattcgt
tcttacaacttaccagttggagctcacataatggtagatgacggtgataagattaaaatt
ggtaaaatcttagttaagatacctcgtaaatctgcaaaagcaggtgatattacaggaggt
cttccacgtgtaacagaacttttcgaagctcgtaatccttctaatcctgctgtagttagt
gagatagatggtgtagttagctttggtaaaattaaacgtggtaacagagagattatagtt
gagtctaaacttggtgaggttaagaaatacttagttaagctttctaaccaaattcttgtt
caagaaaatgattatgtaagagcaggtatgccattatcagacggatctataactccggaa
gacatcttaaatattaaagggccaagcgctgtacaacagtacttagttaatgaggttcaa
gaagtttaccgattacaaggtgttaagattaatgataagcactttgaagttgttgtaaga
caaatgatgcgtaaggttaagattaatgatccaggtgatacaattttcttagagaaccaa
ttaattcataagtctgactttatcgaagagaacgatgctatttttggtatgaaagtagtt
gatgatgctggtgatagtaataacttgaagccaggacaaattgtttctccaagagaatta
cgtgacgaaaatagcttattaagacgagaggataagaacctagttgttgcaaaagatgca
cagccagctactgctactccaatcttacaaggtattacaagagcgtcattacagactaag
tcatttatctctgctgcctctttccaagaaacaactaaagtattaaacgaagctgcagta
agcggtaaggtagattctttagaaggacttaaagaaaatgtaattgtaggacacagaatt
cctgcaggaacaggtatgcgtcgctatgataacattattgtaggttctaaagaggaaatg
aacgaaatggttgaagctaaacaggaaactgaagtgaactataattaa
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