Croceibacter atlanticus: CA2559_01045
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Entry
CA2559_01045 CDS
T01256
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cat
Croceibacter atlanticus
Pathway
cat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CA2559_01045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cat03021
]
CA2559_01045
03019 Messenger RNA biogenesis [BR:
cat03019
]
CA2559_01045
Transcription machinery [BR:
cat03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CA2559_01045
Messenger RNA biogenesis [BR:
cat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CA2559_01045
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
NACHT
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
EAP87298
UniProt:
A3U4Y1
LinkDB
All DBs
Position
254812..256551
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AA seq
579 aa
AA seq
DB search
MLDINALKAKKLPELQEMAKTLEVPKYRSLKKLDLVYQILDYQAANPHKVKEVLSDDKQS
DSQKTNSETTKKSSDSKPKQATTKDSSTKAEQKTKPARAPRANQKNPRPKPAKGATSSQE
DKKQKPIAKESKETKPAPANKRPNPKAQQNSNSSKTDSRSNNDTKSSNDNRHPKSDNRNN
SKNDNRNSKQNNKGNRDTRNRYKEPDYEFDAIIESEGVLDMMQDGYGFLRSSDYNYLSSP
DDIYVSQSQVRLFGLKTGDTVHGQVRPPKEGEKYFPLIKINKINGLKPSVVRDRVSFEHL
TPLFPQEKFNLAERQSTISTRIIDLFSPIGKGQRGMIVSQPKTGKTMLLKDVANAIAANH
PEVYQIILLIDERPEEVTDMQRNVKGEVVASTFDKEAHEHVRVANIVLEKAKRLVECGHD
VVILLDSITRLARAYNTVQPASGKVLSGGVDANALHKPKRFFGAARNIEGGGSLSIIATA
LTDTGSKMDEVIFEEFKGTGNMELQLDRKIANRRIFPAIDLTSSSTRRDDLLLDEKTIQR
MWIMRKYLADMNPVEAMEFINDRFKQTKNNEEFLISMNG
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgttagacattaacgcattaaaagccaagaaattacctgaattacaggaaatggctaaa
acacttgaagttcctaaatacagaagcttaaaaaaattagacttagtatatcaaatctta
gattaccaagcagcaaaccctcacaaagtaaaagaggttttaagtgacgataagcaaagt
gattctcaaaagacaaattctgagaccacaaagaaatcatcggactctaaaccaaagcaa
gctactacaaaggactcttctactaaagcagagcaaaaaactaaaccagctagggcacca
agagctaatcaaaaaaaccctaggcccaagcctgcaaaaggggcaacgtctagtcaagaa
gacaaaaaacaaaagcctatagcaaaagaatctaaagagactaaaccagctcctgcaaac
aagagaccaaatcctaaggcacagcaaaactctaacagtagtaagacagattctcgctca
aataacgatactaagtcttctaatgataaccgtcatcctaaaagtgataatagaaataac
tctaagaatgacaatcgcaacagtaagcaaaataataaaggcaacagagacaccagaaac
cgctataaagaaccagactatgagtttgatgcgattatagagagtgaaggtgttttagac
atgatgcaagatggctatggcttcttaagatcttcagactataactatctttcgtcacca
gatgatatatatgtatctcaatctcaagttagactttttggtttaaaaactggagatact
gtacatggacaagttagacctccaaaagagggcgagaaatactttccattaattaaaatt
aataaaattaatggtttaaagcctagcgtagtaagagatcgagtttcttttgaacactta
actccattatttccgcaagaaaaatttaaccttgcagaacgccagagcacaatttcaacc
cgaataatagatttattctcacctattggtaaaggacaacgtggtatgattgtttcccag
cctaaaactggtaaaacaatgcttttaaaagatgttgcaaatgcaatagcagcaaatcac
ccagaagtttatcagatcatcctattaatagatgaaagacctgaagaggttacagacatg
cagcgcaatgtaaaaggagaggtagtagcctctacttttgataaagaagcacatgaacac
gtaagagttgcaaacattgtattagaaaaagctaagcgcttggtagaatgtggccacgat
gtggttatattattagattcaattacacgtttagcgagagcatacaatacagtacaacct
gctagtggtaaagtactaagtggtggtgtagatgctaatgcactacacaaaccgaaacgt
ttctttggtgctgcaagaaatattgaaggaggcggatctttatctattatcgccacggca
cttacagatacaggctctaaaatggacgaagtaatatttgaagagtttaaaggaacagga
aacatggaacttcaattagatagaaagatcgctaatagaagaattttccctgctattgat
cttacttcttctagtactcgtcgtgacgacctacttttagatgaaaagaccatacaacgc
atgtggattatgcgaaaatacttagcagatatgaaccctgttgaagctatggaatttata
aacgatagatttaagcaaactaagaacaatgaagagttcttaatttcaatgaatggctaa
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