Croceibacter atlanticus: CA2559_01900
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Entry
CA2559_01900 CDS
T01256
Name
(GenBank) ATP-dependent DNA helicase recQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cat
Croceibacter atlanticus
Pathway
cat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CA2559_01900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cat03019
]
CA2559_01900
03400 DNA repair and recombination proteins [BR:
cat03400
]
CA2559_01900
Enzymes [BR:
cat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CA2559_01900
Messenger RNA biogenesis [BR:
cat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CA2559_01900
DNA repair and recombination proteins [BR:
cat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CA2559_01900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HTH_40
HRDC
RecQ_Zn_bind
ResIII
HTH_7
GerE
Sigma70_r4_2
Terminase_5
zf-CXXC
DUF2802
Motif
Other DBs
NCBI-ProteinID:
EAP87469
UniProt:
A3U5F2
LinkDB
All DBs
Position
467248..469344
Genome browser
AA seq
698 aa
AA seq
DB search
MTSTTSSITQLLKTHFGYDSFKPNQEAIINDVLSGKDTLAIMPTGGGKSLCYQLPALAKE
GTALVISPLIALMKDQVDALRANGITAAYYNSSQPEEEQQHVLQQLTKGELSLFYVAPES
LPNLRHTISTITLNLIAVDEAHCISAWGHDFRPAYTKLGSLKQEFPQIPIIALTATADKA
TQDDISKQLNISHAKKHLASFDRQNLFLDVRPGQSRIKQILKFLGPRGAQSGIIYCLSRK
STEKLAQKLKQAGYKAKAYHAGLSPEDRANIQEDFVNDTTPIIVATIAFGMGIDKSNVRW
VIHYNMPKNIEGYYQEIGRAGRDGLKAHTLLFYSYADVIQLRRFTEGTATEEFQLAKLER
MQHYAEALSCRRKALLNYFGEHLTKDCGYCDVCQNPPKYVDGTVIAQKVCSAVARVKEQE
GVTMIVDVLRGAKNAQVFDKGYQHIKTYGAINNVSWNDLQQYIIQLINLGVLEVYFHENG
RLVLTPLAKAILFEGQNIQLAHTEDVKALKDAKTTKVTKNDSLFEQLRNKRSAIAAEKNV
PAYIIFSDASLKDMIKKQPTTIKAFADISGVGKAKLESYAEPFIDVIKTYKAQQKPKVDT
YQQTLQLYTQGMPVEDISKERDLSLNTIYSHLLKLHLEDKLSLNLNEFVTDEELSKVKTA
SKTLNHPEGLKPYYLHFEETIPYWKLKFALTMLEDQEK
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgacatctactacttcatctatcacccaactattaaaaactcattttggttatgacagc
tttaagcccaaccaagaagccattataaacgatgtgctttcggggaaagacaccttagct
attatgcctactggtggtggaaaatcgttgtgctaccaattgcctgcattagccaaagaa
ggaactgctttggttatttcgccattaattgctcttatgaaagatcaggtagatgcattg
cgagccaatggtataactgctgcttattacaacagtagccaaccagaagaagagcagcaa
cacgtgttgcaacaacttacaaaaggtgagttgtctttattttatgttgcaccagaaagc
ttaccaaacttacgccacaccattagtacaattactctaaatctaattgcggtagatgag
gcgcattgtatttctgcttggggacatgattttagaccagcctacactaaacttgggagt
ttaaaacaggagtttccgcaaattcccataattgctcttacagcaactgccgataaggca
acacaagatgatattagcaaacagcttaatatctctcacgctaaaaagcacttggcctct
tttgataggcaaaatttatttttagatgtaagaccaggtcaaagccgcattaaacaaatt
cttaaatttttaggtcctcgaggtgcccaaagcggtattatttattgcctgagcagaaag
agtacagaaaagcttgcccaaaaactaaaacaagctggctataaggctaaagcttatcac
gcaggtttatctccagaagaccgtgcaaacatacaagaagattttgtaaatgacaccaca
cccattattgtggcaaccattgcctttggtatgggaatagataaaagtaatgtgcgttgg
gttatacattataatatgcctaagaatatagaaggctattatcaagaaattggtcgtgca
ggacgagatggcttaaaagcacacaccttactgttttacagttatgcagatgtgatacaa
ttacgcagatttaccgaaggcacagctacagaagagtttcagttggcaaaattagagcgt
atgcaacattacgctgaagcattaagttgccgcagaaaagccttgcttaattattttgga
gaacatcttactaaagattgtgggtattgtgatgtttgtcaaaatccgcctaaatatgta
gatggaacagttatagcgcaaaaggtttgctctgcagtggcacgcgttaaagaacaagaa
ggtgtcactatgattgttgatgtgttacgtggtgccaaaaatgcacaagtatttgataaa
ggataccagcatataaagacctatggtgctataaacaatgtttcctggaacgatttacag
caatacattattcaattaataaatcttggtgtgttggaggtttactttcacgaaaatgga
agattagtgcttacacctttagcaaaggcaattttatttgaagggcagaacattcaacta
gcacataccgaagatgtgaaagctttaaaagatgcaaaaactactaaagtaactaagaat
gacagcctatttgagcaattgcgaaacaagcgttctgctatagctgctgaaaaaaatgtg
cctgcctatattatttttagtgatgccagcttaaaagatatgattaagaagcaacctacc
acaattaaagcttttgcagatattagtggtgttggtaaagctaagttagagagctatgca
gaaccgtttattgatgttattaaaacatataaagcacaacaaaaacctaaggtagacacg
taccaacaaacgcttcaattatatacgcaaggaatgcctgttgaagatattagcaaagag
cgtgatttgtctttaaacactatttacagccacttactaaagcttcatttagaagataaa
ctttcattaaacttaaatgaatttgtaacagatgaagaactttctaaagttaagactgca
agtaaaacattaaaccatcctgaaggtttaaaaccctactaccttcattttgaagaaacc
ataccgtattggaaacttaagtttgcactaactatgttagaagatcaggaaaagtaa
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