Croceibacter atlanticus: CA2559_03430
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Entry
CA2559_03430 CDS
T01256
Name
(GenBank) putative exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cat
Croceibacter atlanticus
Pathway
cat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CA2559_03430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cat03019
]
CA2559_03430
03016 Transfer RNA biogenesis [BR:
cat03016
]
CA2559_03430
Enzymes [BR:
cat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CA2559_03430
Messenger RNA biogenesis [BR:
cat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CA2559_03430
Transfer RNA biogenesis [BR:
cat03016
]
Prokaryotic type
tRNA degradation factors
CA2559_03430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
S1CSD-TOTE-2
OB_HELZ2
S1_2
RNase_II_C_S1
DUF7430
Motif
Other DBs
NCBI-ProteinID:
EAP87775
UniProt:
A3U6A8
LinkDB
All DBs
Position
complement(785913..788120)
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AA seq
735 aa
AA seq
DB search
MSKKKFGKKKSTQIPNLTKTILDIIRKRPNQNFNYKQIASQLNITDASGRNQIIKKLSQL
AAKQQIVEVDRGKFQFNGPQDYVTGTLDMTSKGDGYVVVEDLEDDIFIPSKHINKAFHGD
QVEVYIYNTRRKSKNEGEITKVIERKKKEFVGVITISEKFAFVNIQDTKMYTDFFIPKSK
INGAENNMMVVVELEDWPEKADSPFGRVIEVLGVPGEHETEIHAILAQYGLPHEFPKEVE
EFANKIDTSIQESEIKKRRDMRDTLTFTIDPKDAKDFDDALSFKILENGHYEVGIHIADV
SHYLKPGTILDDEAYERATSVYLVDRVVPMLPEVLSNNACSLRPNEEKYTFSAVFEIDEN
SKIHNQWFGKTVTYSDARFAYEEAQAIIESKSTSIPADVSLTGKAYKTDDAIADAILKMD
KVAKIMRRKRMGQGAISFDKVEVKFELNEANEPVGVFFKTSKDANKLIEEYMLLANKKVA
EFIGKQDPKKTFVYRCHDEPNSDKLSALQNLVGRFGYTLNFKSRKTTTQSLNKLLQDVNG
TKEQNLIDTLTIRTMSKAYYSTENIGHYGLAFDYYSHFTSPIRRYPDVMAHRLLQYYLDK
GKSADAETYEDQCSHSSEMEYLATKAERDSIKFMQIKFMQDHKDENFLGVISGVTEWGIY
VEIIDNKCEGMVRLRDISDDHYDFDEENYAIVGRKTKKVYQLGDEVYVKVKDADLVKRHL
DFTLIGSKAEVETQG
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagaaaaaattcggtaagaaaaaatctacacagattccaaaccttactaaaact
atattggacattattcgtaagcgtccaaatcaaaacttcaattacaaacaaattgcttcc
caacttaacattacagatgctagcggaagaaatcaaatcataaaaaaactttcccaatta
gctgctaaacaacaaattgttgaggtagatcgtggtaaatttcaatttaatggccctcaa
gactatgttactggtaccttagatatgactagtaaaggtgatggttatgtggtcgttgaa
gatttagaagacgatattttcattcctagtaagcatattaacaaagcatttcacggtgat
caggtagaggtatatatttataataccagaagaaaaagcaagaatgaaggtgaaattacc
aaagtaattgaacgaaagaaaaaagaatttgtaggcgttattactatctcagaaaagttt
gcatttgtaaacattcaggatactaaaatgtatacagatttctttattccaaaaagtaag
ataaacggcgcagaaaataatatgatggtcgttgtagagctagaagattggccagaaaaa
gccgattctccttttggtcgcgttatagaagttctcggtgttccaggagaacatgaaaca
gaaatacatgcgattcttgcacaatatggattaccacatgaatttccaaaagaagtagaa
gagtttgctaacaagatagatacatctatacaagaatctgaaattaagaaacgtagagat
atgcgtgatacgctaacctttacaatagatcctaaagatgcaaaagattttgatgatgcc
ttaagttttaagattttagaaaacgggcattacgaagtaggaattcatattgcagatgta
tctcactatcttaaaccaggtacaattttagatgatgaagcttatgaacgtgcaacatct
gtttatttagtagatagagtagtgccaatgcttccagaagtattatctaacaatgcttgt
tcattacgtcctaatgaagaaaaatataccttttcagctgttttcgagatagatgaaaac
tcaaaaatacacaatcaatggtttggtaaaactgtaacctatagtgatgccagatttgca
tacgaagaagctcaggcaattattgaaagtaaatccactagcattcctgcagatgtttct
ttaacaggaaaagcctataaaacagacgatgctattgcagatgctattttaaaaatggac
aaagtagctaaaatcatgcgtagaaaacgtatgggtcaaggtgctatttcttttgataaa
gttgaagttaaatttgagcttaacgaagctaatgaaccagttggagttttctttaagaca
tctaaagatgctaataaacttattgaagaatacatgttacttgccaataagaaagtagca
gaatttataggtaaacaagaccctaaaaaaacatttgtataccgttgtcatgacgagcca
aattcagataaattaagtgccttacaaaaccttgtaggtcgttttgggtacactcttaat
tttaaatcaagaaagactactacgcaatctttaaataaacttttacaagatgtaaatggt
actaaagaacaaaatttaatagatacgcttaccattcgtactatgagtaaagcctattat
tctacagaaaatatagggcattacggtttagcattcgattattattcacatttcacatcg
ccaatacgtcgttatccagatgtcatggcacatcgtttattacagtattatctagataaa
ggtaaatctgcagacgcagaaacttatgaagatcaatgtagccatagtagtgagatggag
tatttagctaccaaagcagaacgtgactctataaaattcatgcagattaaattcatgcag
gatcataaagatgaaaatttcttaggtgtaatatctggagttacagaatggggaatctat
gtagaaattatagataacaaatgtgaaggtatggtaaggttaagagacatctcagatgat
cactatgattttgatgaagaaaactatgctattgtaggtcgaaaaactaaaaaagtgtat
caattaggagatgaagtttatgtaaaagtaaaagatgcagatcttgtaaaacgtcattta
gattttacactaataggaagtaaagccgaagtagaaacacaaggatag
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