Croceibacter atlanticus: CA2559_04615
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Entry
CA2559_04615 CDS
T01256
Name
(GenBank) putative DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cat
Croceibacter atlanticus
Pathway
cat03030
DNA replication
cat03430
Mismatch repair
cat03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CA2559_04615
03430 Mismatch repair
CA2559_04615
03440 Homologous recombination
CA2559_04615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cat03032
]
CA2559_04615
03400 DNA repair and recombination proteins [BR:
cat03400
]
CA2559_04615
Enzymes [BR:
cat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CA2559_04615
DNA replication proteins [BR:
cat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CA2559_04615
DNA repair and recombination proteins [BR:
cat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CA2559_04615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
HHH_3
Intimin_C
T2SSK
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
EAP88012
UniProt:
A3U6Z5
LinkDB
All DBs
Position
complement(1045097..1049461)
Genome browser
AA seq
1454 aa
AA seq
DB search
MYLIFDTETTGLPKNYNAPITDTDNWPRCIQIAWQLHDDMGKLVSHDDMLIKPDGFNIPY
DSEQIHGISTELADKNGVDLVDSLHKFNEALKQTKFVVGQNVAFDINIMGAEFYRKGIDN
PLQELPVLDTCTETTAELCKIPGGRGGKFKLPTLTELHQFLFNKAFNEAHNATADVEATT
RCFLELIRKRIYTAEELDVSPDYFENFSEENPQTIQLIGLKHINLKKASEQIRKALEKEQ
GVDEISEEELEENIAVLEEVTFSHLHNHSQFSVLQSTMSIQDLVDNAIANNMPGVALTDH
ANMMGAFHFVRAVNTYNKSLAGSEDLDKKPLKAIVGCEFQVCEDHNDKSRQDNGYQIVML
AKTKKGYHNLAKMASIAYTEGFYYVPRIDRAVVEKYKEDVIVLTGNLYGEVPSKVLNVGE
KQAEESLLWWKSHFEEDLYMEIMRHDQEDERRANEVLIKLAKAHDIKIVASNNTYYTAKG
DANAHDILLCVKDGEKQSKPIGRGRGYRYGLPNQEYYFKSNDEMKALFKDLPEAITNTQD
VVNKIEGFDLARDVLLPAFEIPEKFKDSKDLDDGGKRGENAFLKHLTYEGAKERYGEITP
EIKERLDFELSIIEKTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSAVAYCLKITNI
DPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIKKYGSDQVAQIITYGTMAAK
SAIRDTGRVLDLPLHETDKIAKLIPDMTKLGKIFGVDEKELSRKFRSEDFEGVKELLSIS
GGNDLQAQTVNQARVLEGSVRNTGVHACGVIITPDDISNFVPIARSKDGELYITQFDNSV
VEDAGLLKMDFLGLKTLTLIKDTVKIVKAKHGVQLDPDSFPLDDEKTYELFQRGETVGIF
QYESPGMQKHMQSLKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGDEDIEYDLPAMEEY
LKETYGITVYQEQVMLLSQKLADFTKGEADILRKAMGKKQKAVLDKMKPKFIEQASAKGH
DAEKLEKVWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNMSNIKQ
VTFFMEECRRMKLDVLGPDVNESFRKFSVNKEGAIRFGMAAIKGVGSSAVESIVAERKEN
GHFKSIFDMAKRIDLRAANKKAFENLALAGGFDSFQDTHRAQYFLDEGDGITFLEKVIRY
AAKYQENKNSSQVSLFGEASEVQIPEPVVPPCEEWGTMEKLRKERDVVGMYISGHPLDDY
NIEMKSFCNANLNYLEDLQQVLNAELSLACILTDIRHLTTKTNKGWAIFTAEDYHNTYEF
KIYGEDYLKYRHLLIPNSFLYVKAFIREGFTNRQTGKKSDPRIQFNNFEMLQDVLERYAR
KLTIQINVNELKGDDIQSLKSILDEHKGDKLLNFVVYEMEDKVKLHMPSRKHKININKDL
LSTLQNKAVHYKLN
NT seq
4365 nt
NT seq
+upstream
nt +downstream
nt
atgtatttaatatttgatactgaaacaactggtttacctaaaaattacaacgctccaata
acagatacagataattggccacgttgtatacagatagcttggcagcttcatgatgacatg
ggtaagttggtgtctcacgatgatatgcttataaaaccagacggttttaatatcccgtat
gactcagagcaaattcacggtatttctacagagttagcagataaaaatggtgtagacctg
gtagactcacttcataaatttaatgaagcattaaaacagacaaaatttgttgtaggacaa
aatgttgcgtttgatattaatattatgggtgccgagttttacagaaaaggcatagacaac
ccattgcaagaactacctgttttagacacttgtacagaaaccacagcagaactttgtaaa
attcctggtggacgtggcggaaaatttaaactgcctacccttacagaacttcaccaattc
ttatttaacaaagcttttaatgaagctcacaatgccactgcagatgttgaggcaacaacg
cgatgctttttagaacttataagaaagcgtatttatacagctgaagagttagacgtgtct
ccagattattttgagaatttttctgaagaaaacccacagacaattcaacttatagggtta
aagcatattaacctcaagaaagcttcagaacaaataagaaaagctcttgaaaaagaacaa
ggagtcgatgagatatcagaggaagagctagaagaaaacattgcagtcttagaagaagtt
acgttttcccacttacacaatcatagccaattctctgttcttcagtctacaatgagtatc
caggatttagtagacaatgctatagctaataatatgcctggtgtagcactcacagaccac
gccaatatgatgggtgcttttcattttgtgagagccgttaatacttataacaaatcttta
gcaggtagtgaagacctagacaaaaagcctttaaaagccattgtaggttgtgagtttcag
gtctgtgaagatcacaatgataaatccagacaggataacggttaccagatagtaatgctt
gcaaaaactaaaaaaggctaccataatttggctaagatggcatctatagcttatacagaa
gggttttattatgtaccaagaatagacagagctgttgtagaaaaatacaaagaagatgta
attgttttaacaggaaacctatatggagaggtaccaagtaaggttttaaatgtaggagaa
aagcaagccgaagaatctttactttggtggaaatctcattttgaagaagatctttacatg
gaaattatgcgccatgaccaagaagacgagcgtcgtgctaatgaggttttaataaaacta
gccaaagcgcacgacataaaaatagttgcaagcaacaatacctattacacagcaaaagga
gatgctaatgctcatgacattttactttgcgtaaaagatggagaaaagcaaagcaaacct
attggccgaggacgtggttatcgttatggtttacccaaccaagaatactattttaagagt
aatgatgaaatgaaggctttatttaaagaccttccagaagcaattaccaatacgcaagac
gttgtaaataaaattgaagggtttgatcttgctagggacgttttattaccagcctttgaa
attcctgaaaaatttaaagattctaaagatttagatgatggtggtaaacgaggcgaaaat
gcatttttaaaacaccttacttatgaaggtgcaaaagaacgttatggagagataactcca
gagattaaagagcgtttagattttgagctatctattattgaaaaaacagggtatcctgga
tattttctaattgtagaagactttattagagaagcaagaaacatggacgtttctgttggt
ccaggtcgtggttctgctgctggtagtgccgtagcttattgcttaaaaattaccaatata
gaccctattaaatacgatctactttttgagcgtttccttaatccggatcgtgtaagtatg
cccgatattgatattgattttgatgacgaaggtcgaagccgtgtcatggattacgtaatt
aaaaaatatggtagtgatcaagtagcacagattataacttacggtactatggcagcaaaa
tctgccataagagataccggtcgtgttttagatttaccgttgcacgaaacagataagatt
gccaaacttattccagatatgactaagcttggtaaaatatttggcgtagatgaaaaagag
ctctccagaaaatttagaagtgaagattttgaaggcgtaaaagaacttttaagcatttca
ggcggaaatgatttacaggctcaaaccgttaatcaggctcgtgttttagaaggttctgta
agaaatactggtgtacacgcttgtggcgttataatcacaccagatgatatctccaacttt
gttcctattgcaaggtctaaggatggtgaattatacatcacacaatttgacaattctgta
gtagaagatgctggactacttaaaatggatttccttggtctaaaaacacttactcttatt
aaggataccgtaaagattgtaaaagcaaaacacggcgtacaattagacccagacagtttt
cctttagatgatgaaaaaacgtatgaactattccaacgtggtgaaaccgtaggtatattt
caatatgaatctccaggaatgcagaaacatatgcagtctttaaaaccaacagtctttgat
gaccttattgcaatgaacgcgctttatcgtccaggaccaatggaatatataccaagtttt
attgccagaaaacacggtgatgaagacatagagtatgatttacctgcaatggaagaatat
cttaaggaaacttatggtattacggtttaccaagagcaagtaatgcttttatctcaaaag
cttgcagattttacaaaaggtgaagcagatatccttcgtaaagcaatgggtaagaagcaa
aaagctgtactcgataaaatgaaacctaaatttattgagcaggcttcagctaaaggtcat
gatgcagaaaaattagaaaaagtgtggaaagactgggaagcctttgcaagttatgctttt
aataaatctcactctacttgttatgcctggattgcctaccaaacagcctaccttaaagca
cactatcctgcagaatatatggctgcggttttatctaacaacatgagcaacataaagcag
gtaacattctttatggaagaatgcagacgtatgaaacttgatgtgttaggtccagatgtt
aatgaatctttcagaaaattttctgtaaataaagaaggtgccattcgttttggtatggca
gcaataaaaggtgtgggttcaagtgccgtagagtccattgtagcagagcgaaaagaaaac
ggtcattttaaatcgatcttcgatatggctaaacgtatagatttacgtgctgccaataaa
aaagcttttgaaaatctcgctttagctggtggttttgatagttttcaggacactcacaga
gcacagtattttttagatgaaggtgacggtatcactttcttagaaaaagtaatacgatat
gctgcaaagtaccaggaaaacaaaaactcctctcaagtaagtttatttggtgaagctagt
gaagtacaaattccagaacctgtagtgcctccttgtgaagaatggggaactatggaaaaa
ttaaggaaagagcgtgatgtggtaggtatgtatatttctgggcatccgttagatgattat
aatatagaaatgaagtctttctgtaacgctaacctcaattaccttgaagatttacaacag
gtgctaaatgcagagctatcattagcttgtattcttacagatattaggcaccttaccaca
aaaaccaataaaggttgggcaatttttactgcagaagattaccataacacttatgagttt
aaaatttatggcgaagattacctaaagtacagacacttgctaatccctaattcatttctg
tatgtaaaagcatttataagagaaggttttacaaataggcaaactggcaaaaagagtgat
ccgagaatacagtttaataattttgaaatgcttcaggatgtgttagagcgctatgcaaga
aaactaaccattcaaataaatgtaaatgaattaaagggcgatgacatacagagtttaaaa
tctatattagatgagcacaaaggcgacaagctactcaactttgttgtttatgaaatggaa
gacaaagtgaagctacacatgcctagcagaaagcataagattaatataaataaagactta
ttatcaacgcttcaaaacaaagcggtacactataaattaaattaa
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