Croceibacter atlanticus: CA2559_12343
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Entry
CA2559_12343 CDS
T01256
Name
(GenBank) putative ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cat
Croceibacter atlanticus
Pathway
cat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CA2559_12343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cat03019
]
CA2559_12343
03400 DNA repair and recombination proteins [BR:
cat03400
]
CA2559_12343
Enzymes [BR:
cat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CA2559_12343
Messenger RNA biogenesis [BR:
cat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CA2559_12343
DNA repair and recombination proteins [BR:
cat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CA2559_12343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
RecQ-1-like_HTH
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HHH
Motif
Other DBs
NCBI-ProteinID:
EAP86827
UniProt:
A3UAJ1
LinkDB
All DBs
Position
complement(2679810..2682014)
Genome browser
AA seq
734 aa
AA seq
DB search
MGLTEINLHEQLKKYFGFSQFKGLQEQVIKSIVSNEDTFVIMPTGGGKSLCYQLPALIKD
GTAIVVSPLIALMKNQVDALRSISSQEGIAHVLNSSLNKTEINQVKLDITNGVTKLLYVA
PESLTKDEYVDFLKEQTISFLAIDEAHCISEWGHDFRPEYRNLKKIIKRIGDDIPIIGLT
ATATPKVQEDILKNLNMSNANTFKASFNRPNLYYEVRPKTKEVFSDIIRFIKKRTGKSGI
IYCLSRKSVEELAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGI
DKPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAFYAYKDIEKLEKFMSGKPVAEQ
EIGHALLQEVVAYAETSMSRRKFLLHYFGESFETETGDGGNMDDNIRNPKTKTEAKDEVT
LLLKTIKDTNELYKSKEIVNTLIGKSNALIKSHKTDAHELFGKGKDKDASFWMALLRQVL
VAGYLKKDIESYGVVKLTKRGKDYLNNPQSFMMSEDHVYDSNAEGDIIVATKSKSTGPDE
KLMKMLKDLRKSVAKRKELPPFVIFQDPSLEDMTVKYPITIEELSNIHGVGEGKAKKYGA
QFVKLISEYVEENDIFRPDDFVVKTTGSNSSLKLYIIQNIDRKLPLETIAGSKGMTTQEF
IGELEAIVYSGTKLDISYIVNDLLDEDQQEEIHDYFLEDAETDKIEDALEEFDGDYDEEE
LRLYRIKFISEVAN
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgggattaaccgaaatcaatttacacgagcagcttaaaaagtactttggctttagccaa
tttaaaggccttcaagaacaggtcattaagagcatagtttcaaacgaagatacatttgta
attatgcccactggtggcggaaaatctttatgctatcaattgccagcgttaataaaagac
ggtactgcaattgtggtttcgccgttaattgcattaatgaaaaaccaggtagatgcctta
agaagcatttcttctcaagaaggcattgctcatgtccttaatagttctttaaataaaact
gaaattaatcaagtaaaattagatatcacaaatggtgtgaccaagctattatatgttgcg
ccagaatctttaacaaaagatgagtatgtcgattttcttaaagaacaaaccatttctttc
ttagctatagatgaagcacattgtataagtgaatggggacacgattttaggccagaatac
agaaaccttaaaaaaattattaaacgtattggagatgatattccaataataggacttacg
gcaaccgcaactcctaaagtgcaggaagatatattaaagaaccttaatatgtctaacgcc
aatacatttaaagcttcttttaacaggccaaatttgtattacgaggtacgcccaaagaca
aaggaagtcttttcagatattattagatttataaaaaagcgaactggaaaaagcggtatt
atttattgcttaagcagaaaaagtgttgaagaactagcacagacactacaagtaaacggt
atatctgcagtgccatatcacgctggcttagacgctaagacaagagcaaagcatcaagat
atgtttcttatggaagatgtagatgttgttgtagcaaccatagcttttggtatgggtata
gataaaccagatgtaaggtttgtaatacatcacgatattcctaagagtttagaaagctat
tatcaagaaactggtcgtgccggtcgtgatggtggtgaagggcattgcttggcattttac
gcttataaagatatagagaaactggagaaatttatgagcggtaaacctgttgcagaacag
gaaattggtcatgcattattgcaggaagttgttgcatacgcagaaacctctatgtctcga
agaaaatttttacttcattattttggtgagtcttttgaaactgaaacaggagatggtggt
aatatggatgataatatcaggaatccaaaaactaaaactgaagccaaagatgaggttaca
ttattattaaagactattaaagatactaatgagctttacaagtctaaagaaattgtaaat
accttaatcggaaaatctaacgcattaataaagtctcataaaacagatgctcacgagcta
tttggaaaaggaaaagataaagatgccagcttttggatggcgctattaagacaagtgctt
gttgctggttatttaaagaaggatatagaaagctatggtgttgtaaagcttaccaaacga
ggtaaagactatttaaataatccgcagtcgtttatgatgtctgaagatcacgtttatgat
agtaatgcagaaggagatattattgtagctactaaatctaaatcaactgggccagatgaa
aagttaatgaagatgcttaaagatcttcgtaagtctgtagctaaacgaaaggagttgcct
ccatttgtgattttccaagatccgtctttagaagatatgacggtaaaataccctataact
attgaagagttaagtaatatacatggtgtaggagaaggcaaagcgaaaaagtatggagct
cagttcgtaaaactaatttctgaatatgtagaggagaatgatattttcaggccagatgat
tttgttgtaaaaacaacaggttctaacagtagtttaaaactctacatcattcaaaacata
gacaggaaattaccattagaaaccattgcaggttctaaaggtatgaccactcaagaattt
attggtgagcttgaggctattgtttatagcggaacaaaattagacatctcatacattgta
aatgatttgttagatgaagaccaacaagaggaaatacacgattactttttagaagacgca
gagaccgataagattgaagatgctttagaagaatttgatggtgattatgatgaagaagaa
cttaggctttaccgaataaaatttattagtgaggtagccaactaa
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