Cygnus atratus (black swan): 118243458
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Entry
118243458 CDS
T09349
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X2
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cata03000
]
118243458 (RC3H1)
04121 Ubiquitin system [BR:
cata04121
]
118243458 (RC3H1)
Transcription factors [BR:
cata03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
118243458 (RC3H1)
Ubiquitin system [BR:
cata04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
118243458 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
PaaA_PaaC
Vesi_VP2
Baculo_IE-1
zf-RING_4
zf-RING_10
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
118243458
NCBI-ProteinID:
XP_035393385
LinkDB
All DBs
Position
8:12796140..12859282
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AA seq
1122 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGAEDTKHYEEGKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSGAILSDE
GGVDLPNRKTSALPNGIVSSGSTVTQLISRGTDSSYETGLKPGKMDHLSSSAPGSPPDLL
ESVPNSSISALPVNPHPVPARAPTDLPSVSVTKQLQMVPRGSQLYSTQQADMFYQDHRGA
APPFEPAPYQQGVYYPQTMSRFVRPPPSAPEPGPPYLDHYPPYLQDRVVSSQYTQPQQYP
PMGQPIYPPHYDSRRVYPPVQPYQREEIVRGSPVPIEIPQAAVPSYVPESRDRYQQTEGY
CPVAPHLSQIRPSCHRPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTLPHPFHSEE
YLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAARSVEMANVDSKTMRD
QRLDMQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAMYQNSGPMQAMAVQGASTKSII
SDYSPYGTHGGWGGSPYSPHQNIPSQGRFNDRERLSMSDVAGHGKQLPSAEREQQLRMEL
QQVDHQISQQTQMRGLEAGSNRLLLQREATTLAGQPQPPPPPPKWPGMISSEQLSLELHQ
VEREIGKRTRELSMESQSSLDMKNKLGTTKQTENGQLEPQSKVPAEDLALTFSDVPNGSA
LTQENIGLLSNKTASLSLSEDPEGGGDNHDSQRVGVTPTSAP
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacagattttctctcctgcccaatttgcacacagact
ttcgacgaaacgatccggaagcccatcagcttgggttgcggccacactgtctgcaagatg
tgcctcaacaagctccaccggaaggcgtgcccctttgaccagaccactatcaacaccgac
attgaactccttcctgtgaactcggccttgctgcagctagtgggtgctcaggttcctgag
cagcagccaattactttatgtagtggagctgaagataccaagcattatgaggagggcaag
aaatgtgtggaagaattagcattgtacctcaaaccactcagcagcgcaagaggtgtgggt
cttaacagtactactcagagcgttttaagtcgtcctatgcaaaggaaacttgtgacacta
gttcactgccagctagtggaggaagaaggacggatcagagctatgcgtgctgcacggtcg
cttggtgaaagaacagtcacagagctcattcttcagcatcaaaatcctcagcaactttct
tccaacctctgggctgcagtgagagccagagggtgccagttccttggcccagccatgcaa
gaggaggctttaaagctggttctgctagctctggaagatggatctgctttgtcacggaag
gtcttggttctctttgtggttcagagactggagccacgatttcctcaggcttctaaaact
agcattgggcatgttgtccagcttctttacagagcctcatgcttcaaggtgacaaagcgt
gatgaggattcctccctgatgcaattgaaggaggaattccggacttacgaagctctgaga
agggaacatgattcccagattgttcaaattgctatggaagcaggtttacgcattgcacca
gatcagtggtcctccctgttatatggagaccaatctcacaaatcccacatgcagtctatc
attgataagttgcagaccccagcctcgtttgcacagagtgttcaggaattaactattgct
cttcagaggactggagatccagctaacctgaatcgtcttcgacctcaccttgagctcctg
gcaaatattgatcccagtccagatgctccacctccaacatgggaacaactggaaaatgga
ctggttgctgtgaggacggttgttcatggcttagttgattatatccagaatcacagcaaa
aaaggaactgatcagcaacagcctcctcagcacagcaagtacaagacatacatgtgccga
gacatgaaacagagaggaggatgcccccgaggagccagctgcacctttgcacattcacag
gaagagctagaaaaatttcgtaaaatgaacaagcgtctggttccaagaagacccctgagt
gcctcccttggccagctgaatgaggtgggcctaccttcaggagctatcctctcggatgaa
gggggagtggacttgcccaacaggaaaacctctgctctgccaaatggaattgtgtcatca
ggcagcacagtgacgcaacttatttctcgagggactgactccagttacgaaactggtctg
aagccagggaagatggaccatctgagtagcagtgcccctggatcccctcctgacttgttg
gaatctgtccccaacagctctatttctgctttaccagtgaaccctcatcctgtgcctgct
cgggcgccaacagatctgccttcagtgtctgtcaccaagcagttgcaaatggtaccgcgt
gggtcccagttgtatagtactcagcaagcagatatgttttatcaggatcacagaggagct
gccccaccgtttgagccagcaccataccaacaaggagtttactatcctcagaccatgtct
cgctttgtgcgacctcctccatcagctcctgaacctggtccaccttatctagaccattat
ccaccctaccttcaggatcgtgtggtgagctcacagtacacacagccgcagcagtatcct
cctatgggacaacccatatatccaccacactatgacagccgtcgtgtgtacccccccgtg
cagccatatcaacgagaggagattgtccgaggaagccctgtgcctattgaaattccccaa
gcagctgtaccctcctatgtacctgaatccagggacagataccagcaaacagagggttat
tgcccagtggctccacatctcagtcagatcagaccttcatgccacaggcctcatcccagc
ctggatgaacttcaccgacgaaggaaggagatcatggcccagctagaggagaggaaagtg
atttctccacctccttttgcaccttcaccaaccttgcctcatccttttcattcggaggag
tacttggatgaagacctgaaggtagccgggaagtacaaaggaaatgactacagccagtat
tctccgtggtcctgtgacaccatcggctcctacattggaaccaaagatgcaaaacccaaa
gatgttgtggcagcaaggagcgtggagatggcgaatgtagatagtaaaaccatgcgtgac
caacgattggacatgcagagaagagcagcagagactggcgatgatgacctcattccattt
ggagaccgaccaactgtgtcgagatttggggctatctctcgtacttccaaagcgatgtac
cagaattctggtcccatgcaggccatggcggttcagggagcttccaccaaatcgattatt
tcagactacagtccttatggaactcacggtggctggggaggctctccttattctccccat
caaaatataccttctcagggacgtttcaatgacagggagagactgtccatgtcagatgtg
gctggtcatggaaaacagttgccttcagctgagcgggagcagcagctgcgcatggagctg
cagcaagtggaccaccagattagccagcagacacaaatgcgaggactagaggctggtagt
aacaggctgctgttgcagagggaggcgactaccctggcaggccaaccacagcccccaccc
ccacctcccaagtggcctgggatgatctcaagtgagcagctgagcttggagctacaccag
gtggaaagggaaattgggaagagaacccgtgagctgagcatggagagccagtcttccctg
gatatgaaaaacaaactgggcaccactaaacagacagaaaatggacaattagaaccacaa
agcaaggttccagctgaggacctcgcactaacattcagtgatgttccaaatggatccgcc
ttgacacaagagaacatcggcctcctgtcaaacaagacagcatctctcagcctgtcagag
gacccagagggaggaggagacaaccacgactcccagagagtgggagttacgcccacatct
gctccatga
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