Cygnus atratus (black swan): 118243574
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Entry
118243574 CDS
T09349
Symbol
TNR
Name
(RefSeq) tenascin-R isoform X1
KO
K06252
tenascin
Organism
cata
Cygnus atratus (black swan)
Pathway
cata04510
Focal adhesion
cata04512
ECM-receptor interaction
cata04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118243574 (TNR)
04518 Integrin signaling
118243574 (TNR)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118243574 (TNR)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cata00536
]
118243574 (TNR)
Glycosaminoglycan binding proteins [BR:
cata00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118243574 (TNR)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
FN3_DSCAM-DSCAML_C
EGF_Tenascin
Fn3_PBP1
Pur_ac_phosph_N
Fn3_Dep-1_3rd
Fn3_Dep-1_2nd
Fn3_ROS1
EGF_2
FN3_Tor_3rd
DUF7949
Big_5
Lzipper-MIP1
Motif
Other DBs
NCBI-GeneID:
118243574
NCBI-ProteinID:
XP_035393633
LinkDB
All DBs
Position
8:12445562..12472990
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AA seq
1355 aa
AA seq
DB search
MGTDSENPVLRNVLLSFNLLLLGTVLKPFECRLEVTTEPAERPAVDEEGGLANCSPPIKE
QPMVFHHIYNINIPLDSCCSSMLKPSAEEVSSEDDRLAEYTEQTSDSESQVTFTHRINLP
KQACKCSTSLPSLQELLSRIEMLEREVSMLRDQCNSNCCQENAATGRLDYTLPCSGHGNF
SLESCRCVCSEGWAGSNCSEPRCPRGCSSRGVCLEGQCVCDNDYGGEDCSQLRCPAGCGA
RGLCVDGECVCEEGFAGEDCSQPRCPRDCSGKGYCTNGTCVCVEGYAGEDCGWLRCPNAC
SGRGICQDGICVCEDGYGGQDCSAVAPPENLRVTGISDGSIELAWDSPGAATEYVISYQP
AGPGGTQLQQRVPGDWSTITITELEPGVAYNVSVYAVISDVLSIPVTAKVMTNLATPQGL
KFKTITETTAEVQWEPFSFPFDGWEISFIPKNNEGGVIAQLPSTVTTFNQTGLKPGEEYT
VTVVALKDQARSPPASDSVSTLIDGPTQILVRDVSDTVAFVEWTPPRARVDAILLKYGLA
DGEGGRTTFRLQPPLSQYSLQALRPGAHYHLAVSALRGTNESRPALAQFTTEIDAPKNLR
VGSRTPASLELAWDNSEAEAHSYRVVYSTLAGEHYHEVLVPRDTGPTTRATLTDLVPGTE
YGIGISAVMDSQQSVPATMNARTELDSPRDLLVTASTETSISLAWTKAMGPIDHYRVTFT
PASGMASEVTVSPDKSQLTLSELEPGTEYTITIIAERGRQQSLEATVDAFTGVRPITQLH
FSQLTSSSVNITWSDPSPPADHLVLTYSPRDEEVAQRLVLDGTLKHASLTGLWPSTEYLV
SLVAVHGAVSSEPVVGSITTGMDAPKDLRVGNITQDSMIVYWSPPVAAFDHYRISYRATE
GRTDSAAIASDATEYSLHRLQPATKYEIGVKSVRGREESEVASITTYTAMDAPLGVTATN
ITPTEALLQWNPPLMDVESYVLVLTRHAVAGETILVDGTNQEYQLTNLLPSTTYTVVMYA
TNGPLTSQTISTNFTTLLDPPSNLTASEVTRRSALLSWLPPVGEIENYVMTYRSTDGSRK
ELIVDAEDTWIRLEGLSETTEYIVRLQAAQNAMRSSFISTTFTTGGRIFANPQDCAQHLM
NGDTLSGVYTISINGDLSQRVQVYCDMTTDGGGWIVFQRRQNGLTDFFRKWADYRVGFGN
LEDEFWLGLDNIHKITSQGRYELRIDMRDGQDAAYAYYDKFSIGDSRSLYKLRIGDYNGT
SGDSLTYHQGRPFSTKDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGEARHSQGINW
YHWKGHEFSIPFVEMKMRPYNHRNISGRKRRSLQL
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atggggactgacagtgaaaacccagtgctgaggaacgtgctcctcagcttcaacttgcta
ctgctgggcaccgtcctcaagcctttcgagtgccggctggaggtgacaacagagccagcc
gagcggccggccgtggatgaggagggtggtcttgccaactgcagtccacccatcaaagag
cagcccatggttttccaccacatctacaacatcaacatccccctggacagctgctgctcc
tccatgctcaagccttcggccgaggaggtgagttcagaagacgacaggctggcggagtac
acggagcagacctccgacagcgagagccaggtcaccttcacccacaggataaacttgccc
aagcaggcctgcaagtgctccacctccctcccatccctgcaggagctgctgagcaggatt
gagatgctggagagggaggtctccatgctccgcgaccaatgcaactccaattgctgccaa
gaaaatgcagccacaggacgcctggattacaccctgccgtgcagcggccacgggaacttc
agcctggagtcgtgccgctgcgtctgcagtgagggctgggccggcagcaactgctcggag
ccccgctgcccccggggctgctccagccgtggtgtctgcctggagggccagtgcgtctgt
gacaacgactacggcggtgaggactgctcccagctccgctgccccgccggctgcggcgcc
cgtgggctctgcgtggatggagagtgtgtctgtgaggagggcttcgccggtgaggactgc
tcccagccccgctgcccccgcgactgctcgggcaaggggtactgcaccaacggcacctgt
gtgtgcgtggagggctacgctggagaggactgcgggtggttgcggtgtcccaatgcctgc
agcggacgtggcatctgccaggatggcatctgtgtctgcgaggatggttatggagggcag
gactgctcggcagtggctcctcccgaaaacctgcgcgtgacggggattagcgacggctcc
atcgagctggcatgggacagccccggggcagccaccgagtacgtcatctcctaccagccg
gcaggcccagggggcacccagctccagcagcgggtgcctggggactggagcaccatcacc
atcacagagctggagccaggcgttgcctacaacgtcagcgtctatgcggtcatcagcgat
gtcttgagcatccctgttaccgccaaggtgatgaccaacctggccacaccgcaggggctg
aagttcaagaccatcacggagacaaccgcggaggtgcagtgggagcccttctcctttccc
ttcgatggctgggagatcagcttcatccccaagaacaacgagggcggtgtgatcgcccag
ctccccagcaccgtcaccaccttcaaccagacggggctgaagccgggtgaggagtacacc
gtcaccgtggtggccctcaaggaccaagccaggagcccccctgcctctgacagcgtctcc
accctcatcgatggcccgacgcagatcctggtgcgggacgtctccgacacggtggccttt
gtggagtggacgcccccacgtgcccgggtggacgccatcctgctgaagtacgggctggcg
gacggggagggcgggaggaccaccttccgcctgcagccccccctcagccagtactccctg
caggccctgcgccctggcgcccactaccaccttgccgtcagcgccctccggggcaccaac
gagagccggccggccctcgcccagtttaccacagagattgatgcccccaagaacctgcgg
gtgggctcacggacacccgccagccttgagctcgcctgggacaacagcgaggcggaggca
cacagctacagggttgtctacagcaccctagctggagagcactaccacgaggtcctggtg
ccacgggacaccggccccaccactcgggccaccctcacagacctggtgccggggacggag
tatggcattgggatttcagccgtgatggacagtcagcagagcgtgccagcgaccatgaac
gccagaaccgagcttgacagcccccgggacctcctggtgacggcctccacggagacgtcc
atctcgctggcctggaccaaagccatgggtcccattgaccactaccgagtcaccttcacc
cctgcctcagggatggcctccgaagtgacggtgtccccggacaagtcacagctcaccctc
tcagagctggagcccgggacagagtacactatcaccatcatcgccgagaggggacgtcag
cagagcctggaggccaccgtggatgctttcacaggggtccggcccatcacgcagctgcac
ttctcccagctgacgtcctccagtgtgaacatcacatggagtgacccgtccccaccagca
gaccacctggtcctcacctacagcccccgggatgaggaggtggcgcagcggctggtgctc
gatggcaccctcaagcacgccagcctgacgggcttgtggccgtccaccgaatacctggtg
tcgctggtggccgtccatggtgcagtcagctctgagcctgtcgtgggctccatcacgaca
gggatggatgcaccgaaggaccttagggtgggcaacatcacccaggactccatgattgtc
tactggagccctcctgttgctgcttttgaccactacagaatatcataccgtgccactgaa
gggaggacagacagcgctgccatcgctagcgatgccactgagtacagcctccaccgcctg
cagcccgccaccaagtacgagattggggtgaagagcgtgcggggccgagaggaaagcgag
gtggcctccatcaccacgtacacagccatggatgcccccttgggcgtcacagccaccaac
atcacccccacggaggcgctgctgcagtggaacccgccgctgatggacgtggagagctac
gtccttgtcctcacccgccacgcagttgcaggagaaacaattcttgtggatgggaccaac
caggagtaccagctgaccaaccttctgcccagcaccacctacacagtcgttatgtatgcc
accaacgggcccctcaccagccagaccatcagcaccaacttcacaactcttttggatcct
ccgagcaacctgactgcaagcgaagtcactcggcggagtgccctcctctcctggttgcct
cccgtgggagagatcgagaactacgtcatgacctacagatcgaccgacggaagccgcaag
gagctgattgtggatgctgaggacacgtggatccgcctggaggggctttctgagaccaca
gagtacatcgtgcgcctgcaagctgcccaaaacgccatgcggagcagcttcatctccact
accttcaccacaggtggccgcatctttgccaaccctcaggactgcgcccagcacctgatg
aatggagacacgctgagtggcgtctacaccatctccatcaatggggacctcagccagcgg
gtgcaggtgtactgcgacatgaccacagatgggggcggctggattgttttccagaggcgg
cagaatgggctgactgatttcttccggaaatgggcagattaccgtgtcggcttcggcaac
ctggaggatgagttttggctgggcctggacaacatacacaagatcacgtcccaggggcgc
tacgagctgcgaatagacatgagggatggtcaggacgcagcgtacgcctactatgacaag
ttctccatcggcgactcccggagcctctacaagctccgaataggagactacaacggcact
tctggggactccctcacctaccaccagggccgccccttctccaccaaggacagggacaac
gacgtggctgtgaccaactgtgccatgtcctacaagggggcctggtggtacaagaactgc
catcgaaccaacctcaatggcaagtacggagaggcccggcacagccagggaattaactgg
taccattggaaaggccacgagttctccatccccttcgtggaaatgaagatgcgaccttac
aaccaccgtaacatctctgggaggaagcgacggtccctacagctctga
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