Cygnus atratus (black swan): 118243674
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Entry
118243674 CDS
T09349
Symbol
SMG7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X2
KO
K14409
protein SMG7
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118243674 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cata03019
]
118243674 (SMG7)
Messenger RNA biogenesis [BR:
cata03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
118243674 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
118243674 (SMG7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
118243674
NCBI-ProteinID:
XP_035393837
LinkDB
All DBs
Position
8:13079578..13130334
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AA seq
1141 aa
AA seq
DB search
MSLLCAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV
KTRWSVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKAFNSQQLVHITVI
NLFQLHHLRDFSNETEQHSYSQDEQLCWTQLLALFMSFLGVLCKCPLQNDYQEDSGAAYP
LPAVKVSMDWLKLRPSVFQEAVVDERRYIWPWLISLLNSFQPHEEDLSNNNATPLPEEFE
LQGFLALRPSFRNLDFSKGHQAITGDKEGQQRRIRQQRLIFTGKWIADNQPRLIQCENEV
GKLLFLTEIPELLLEDSSEAKESLTLQETSVAEPLSTDGSPGLKSVLSSGRSLNNNCDAG
EKPMVTFKENIKPREMNREQGRIYPPKDVGRERRDYSKGIVANKNDGKKDNNKRKNETKK
CGLDKMQEAGKQNVAVQVKSQTEMRKTPVSEARKTPVTQTPSQASSSQFIPIHHPGAFPP
LPSRPGFPPPTYVVPPPVAFSMSTGYTFPGGVSVPGTFLQPTAHSPAGNQVQGGKQSHIP
YSQQRPSGPGPMTQGPQQTPPPSQQPLSSLPAQATAQSASQLQVQALAQQQQQQSPTKAV
QGLGKSPPHHSGFQQYPQTDSSKQLWNPPQVQGSLGKIMPVKQSYYLQAQDPLKLFEQSL
QPPVMQQQPLEKKMKPFPMEPYNQNPSEVKVPEYYWDSSYGMADNRVMAQQSNMDRRGKR
QGVFRPEQDAVSRMTFEKSLLEKPSELMSQSSSFLSLSGFSLNQERYPNNSMFNEVYGKN
MNTSTKTEVTPSVAHQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPP
THNHNSVPFSNFGPIGTPDNRDRRIADRWKTDKPAMGGFGLDYLPATSSSSESSWHQPST
PSGTWAAQGPAIEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGQGTMNPP
H
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgctgtgcgcgcagtatctccggcaggcagaagtcctgaaggctgacatgaca
gattcaaagctgggtccagcggaagtctggacatccagacaggctttacaggacttatac
cagaaaatgctagtgaccgatttggagtatgctttagataaaaaagtggagcaggacctt
tggaatcatgcctttaaaaatcagatcacaacgctacagggtcaggcgaaaaatagagca
aatccaaatcggagcgaagttcaggcgaacctttctctgttcttagaggcagctagtggc
ttctacacacagttattacaggaattgtgcacagtttttaatgtagacttgccatgtcgc
gtgaagtcttcccagctgggaatcattagcaataaacagacgcacaccagcgccatagtg
aagccgcagtccagctcctgctcttacatctgccagcactgccttgtccaccttggagat
attgctcgatataggaatcagaccagccaggcagagtcttactacagacacgcagctcag
cttgtcccttctaatggtcagccttataatcagttggctattctagcctcatccaaagga
gaccacttgaccacaattttctactactgcagaagtattgctgtgaagtttcctttccca
gctgcctccactaacctacaaaaagcactttctaaagcactggaaagtcgtgatgaggtg
aagacgcgatggagtgtgtctgacttcatcaaggcatttattaaattccatggccatgtg
tacctgagtaagagtttggagaagctgagccctcttcgagagaagctggaagaacagttc
aagaggttgttattccaaaaggccttcaattctcagcagttggtacatattactgttatc
aatctgttccaactgcatcacctgcgagacttcagcaatgaaacagagcagcacagttac
agccaggatgagcagctctgctggacacagttgctggctctcttcatgtcctttcttgga
gttctgtgcaagtgccctttacaaaatgactatcaggaagactctggggctgcatatcct
cttccagctgtgaaggtttcaatggactggctgaaacttaggcccagtgttttccaggag
gcagtagttgatgaaagacggtacatatggccatggctgatttctcttctaaacagcttc
cagcctcatgaagaagatttgtccaataataatgcaacccccctcccagaagaatttgag
ttgcagggattcttggctctgagaccctcattcaggaacttggatttttccaaaggccac
caggcaattacaggagataaggaagggcaacaacgtcggatacggcaacagcgactcatc
ttcacaggcaaatggattgctgataatcagccaaggttgattcagtgtgaaaatgaggta
ggaaagctgttgttcctgacggaaatcccggaattattactagaggattctagcgaagcc
aaagagagtctcaccttgcaggaaacgtctgtcgcagaaccactatccacagatggcagc
cctggactcaaatcagttctgtcctctggcagaagcctaaacaacaactgtgatgcagga
gaaaaaccaatggtcacgttcaaagaaaatattaagccacgagaaatgaacagagagcaa
gggcgaatctatccacctaaagatgtaggtagggaaagacgggactatagcaaaggaata
gtagccaataagaacgatggaaagaaggataacaataaaagaaagaatgagaccaagaaa
tgcggcttggataagatgcaggaagcaggaaagcagaatgtggcagttcaggtgaaatcc
cagacagagatgaggaagactccagtgtctgaagccaggaaaacacctgtaactcagact
ccgagtcaggccagcagttcccagttcatccccattcatcacccaggagctttccctccc
cttcctagccggccagggttcccacctccgacctacgttgtccctccccctgtggctttc
tccatgagcacggggtacaccttcccaggcggcgtttctgtcccaggaaccttcctccag
cccacggctcactcgcctgcaggaaaccaggtgcaaggtgggaaacagtcccacattcct
tacagccagcagcggccctccggaccggggccgatgacccagggacctcagcaaacacca
cctccctcccagcaacccctctcatctttaccagctcaggcaacagcacagtcagcaagc
cagttacaggtccaagcgctggcccagcagcagcagcaacagtccccaacaaaagctgtg
cagggcctggggaagagcccgccacaccactctgggttccagcagtatccacagacagac
tcgtcaaagcagctctggaacccgccacaagtccaaggttcactggggaagatcatgcct
gtaaagcagtcctattacctgcaggcccaggaccctctaaaattgtttgaacagtcatta
cagcctcctgtgatgcaacagcaacctctggagaaaaaaatgaagcctttcccaatggag
ccatataaccagaacccctcagaagtcaaggtgccagaatattactgggactcttcctac
ggcatggccgacaacagggtgatggcacagcagtccaacatggaccgcagggggaaacgg
caaggagtcttccgcccagagcaggatgctgtctccaggatgacctttgagaagtccctg
ctggaaaaaccgtcagaattgatgtctcagtcatcatctttcctgtctctcagtggcttt
tctcttaatcaggaaagatatccaaataacagcatgtttaatgaggtatatgggaaaaac
atgaataccagcacaaaaacagaagtcaccccttcagttgcccatcaggagacttcacta
tattctctctttgaagggactccatggtctccatcccttccagccagctcagatcattcg
acaccagccagccagtctcctcactcctccaaccccagcagcttgccaagctcccctcca
acccataaccacaattctgttcccttctccaacttcggacctattgggactccagacaac
agagacaggagaatcgcagaccgctggaagacagataagccagcaatgggagggtttggt
ctggactatctcccagcaacatcgtcatcctcagagagcagctggcaccagcccagcact
cccagtggcacctgggcagcccaaggccctgccatagaggactcctcagctgtgctcatg
gagagtctgaagtccatctggtccagttccatgatgcacccgggaccctcagccctggag
cagctgttaatgcagcagaagcagaaacagcaacgtggacaaggcaccatgaacccgccg
cattga
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integrated database retrieval system
