Cygnus atratus (black swan): 118243933
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Entry
118243933 CDS
T09349
Symbol
TAF5L
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
118243933 (TAF5L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cata03021
]
118243933 (TAF5L)
03036 Chromosome and associated proteins [BR:
cata03036
]
118243933 (TAF5L)
Transcription machinery [BR:
cata03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
118243933 (TAF5L)
Coactivators
SAGA/TFTC/STAGA complex
118243933 (TAF5L)
Chromosome and associated proteins [BR:
cata03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
118243933 (TAF5L)
STAGA complex
118243933 (TAF5L)
TFTC complex
118243933 (TAF5L)
SAGA complex
118243933 (TAF5L)
SLIK complex
118243933 (TAF5L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
TFIID_NTD2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_IFT122_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_WDR19_1st
WD40_RFWD3
PEP5_VPS11_N
PROPPIN
WD_LRWD1
Ge1_WD40
eIF2A
Nbas_N
Motif
Other DBs
NCBI-GeneID:
118243933
NCBI-ProteinID:
XP_035394437
LinkDB
All DBs
Position
3:77682303..77702530
Genome browser
AA seq
589 aa
AA seq
DB search
MKRVRTEQIQMAVSCYLKRRQYVDSEGPLKQGLRLCQTAEEMAANLTVQSESGCANVVSA
APCLAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNMVQNGLKSTVDSFY
SRFHGMFLQNASQKDIIEQLQTTMTIQDILSNLKLRAFLDNKYVIRLQEDSYNYLLRYLQ
SDNNNALCKVLTLHIHLDVQPAKRTDYQLYAGGSSSRNESNGLEPSEVPASILQNEAALD
LLQDSIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISPNSKLLAAGFDNSCVKLWSLRSR
KLKSEPHLVDVSRIRLACDILDEEEEEDDSAGTEMKILRGHCGPVYSTRFLSDSSGLLSC
SEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPCSLYFASGSHDRTARLWSFDRTYPLR
IYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLALAFSPNG
KYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIR
NTYCNAPADGSSSELVGVYTGQMNNVLSVQFMACNLLLVTGIAQENQEH
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcgtacgcacagaacagattcagatggcggtgtcctgctacctcaagcgccgt
cagtatgtggactcagaaggtcccctaaaacaagggctgaggctgtgtcagactgctgaa
gagatggcagctaatctcacagtccaatctgaatctggttgtgccaacgttgtgtctgca
gctccctgcctggcggagccacagcaatatgaagtacaatttggacgattacgcaatttt
ctcacagattcagattctcagcacagccatgaagtgatgcctcttctgtatcccctcttc
gtctacctccatctgaacatggtccagaatggcctgaaaagcacagtggacagtttttac
agccgcttccatggcatgttcttgcagaacgccagccagaaggatatcattgagcagttg
cagactaccatgactattcaagatatcctgtccaacttgaagctccgggcttttctggac
aacaagtacgtcatccgccttcaagaggacagctacaactaccttcttcgctacctccaa
agtgacaacaacaacgccctgtgcaaagtcctgaccttgcacattcacctggatgtgcag
cccgccaagaggaccgactaccagctctacgccggtgggagctcctcgcgcaacgagagc
aacggcctggagcccagcgaggtgccggcttccattctgcagaacgaggcggcgctggat
ctactgcaggacagcattaagcgcgtcaaggacgggcccccttccttaaccaccatctgt
ttctatgccttctataacacggagcagttgctgaacacggccgagatttcaccgaacagc
aagctgctcgctgctgggtttgataattcgtgcgtcaagctgtggagcctgcgttccagg
aagttaaaatctgagccccacctcgtcgatgtgtcccgcatccgcctggcttgtgacatt
ctggatgaggaggaggaagaggatgacagcgcaggcacagaaatgaagatcctgagagga
cactgcgggcccgtgtacagcacgaggttcctttcggacagttcggggctcttatcttgc
tctgaggacatgtccatcagatactgggacctcggaagctttacaaacactgtgttgtac
caaggacatgcctaccccgtctgggatttggacattagcccctgcagcctgtactttgcc
agcggttcccacgatcgcacggcgaggctctggtcgttcgatcggacgtacccgctgcgg
atatatgctggccacttggcggacgtggactgcgtcaagttccaccccaactccaactac
ttggcgacgggctccacggacaaaaccgtgcgcttgtggagcactcagcaaggcaactcg
gtgcgtctgttcaccgggcaccgcggccccgtgctagcgctcgcgttttcccccaacggt
aagtacctggcctcggcgggcgaagaccagcggctaaagctgtgggacttggcttcggga
actctctacaaagaactgaggggccacacggacaacataaccagccttacttttagcccc
gacagtagcttaatcgcttcggcctcgatggacaattccgtccgggtctgggacatccgg
aacacttactgcaacgcccctgcggatgggtcttccagtgaactggttggtgtatatacc
ggacagatgaataatgtactgagcgtacagtttatggcctgtaatcttcttctagtgact
ggaattgcacaagaaaatcaggaacattaa
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