Cygnus atratus (black swan): 118244096
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Entry
118244096 CDS
T09349
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cata03021
]
118244096 (SCAF8)
03041 Spliceosome [BR:
cata03041
]
118244096 (SCAF8)
Transcription machinery [BR:
cata03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118244096 (SCAF8)
Spliceosome [BR:
cata03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
118244096 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
DUF3525
Motif
Other DBs
NCBI-GeneID:
118244096
NCBI-ProteinID:
XP_035394727
LinkDB
All DBs
Position
3:complement(66503663..66597204)
Genome browser
AA seq
1361 aa
AA seq
DB search
MARQGDKHPLASQLYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPE
YKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLW
QKNNVFKSEIIQPLLDMAAGIPPPVVTPVLPSTTAAMSNNTPGTPVTPVTPANVVQSLPD
PWVSQIANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSLLQALDAGLVVQLQAL
TAQLTAAAAAANTLTPLEQSVSFNKKLMDRFDFGEEPEQNEEPKKETPTSQLPLVPESVN
NSLFHQLAEQLQQQNLEHLRQQLLEQQQPQKASPNEENQEGNFGSEHSASPSQGSSQQQF
LEAETNVDDSMDIQQQDMDIDEVQDVAEEEIFEQEEKKSTVRSRSRTRSRSRSRSPRKRR
SRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVC
STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSG
SYKIGSKIIKIAWALNKGVKTEYKQFWDVDLGVSYIPWEKVKLDDLEGFAEGGMIDQETV
NTEWETARNSEPAKETTQTTQTTTVDKSTVITTQTEAYTQPVTMLQIPVAPAVPAVSLVP
PAFPVTMSVPPPGYSAIPPPPFLRASFNPSQPPPGFMPPPVPPVVPPPVVPPPVVPPVVP
TPLVQPPLPITQETMKDVPFTSLVLPVGTVTSNLATPTLSAGSVFNPLPINKPEPDEKGS
HLTDLQISSSENNRAVQSDVTSSSGLVGGVQPPSVSSSSGLTGEGQPPSVSSSSGLAGGV
QPPIVSSSSGLVGGVQPPTVSSSSGLAGGVQLPTVSSSSSLAGGVQPTSVSSSSGLMAGV
QPPNVSSSSGLLAGVHPPSISSSPGLLPGMQPPSVSSSSGVLAGVQPPSVSNNSGLLIMP
PPNVSSSSGLMGVPPPNISSSSGLLAMQHPAGVQNMPHLNISNQRMPGMPLIDIRPGLMP
HSPGPRFPLMQPGVPPQRSIPPPAILDPSLHPPPRGPFPPGDIFNQTERPFGAPGRQNID
SISNPEKRLPLGGDNIQQEGDRDYRFPPVENRDNLNRPSPVDVRDPVGRPPIDPREGVGR
PPVDGREHFARPHIDMRENFGRPGIDNLGRREHFAFNSDKHWGQRGDYDEREHHTFPIYG
GPKGFHEDRERFRHVNYRFDSRSGPSWNRGFEPDAHRDFDDRRRPWERQRDRDDRDFNFC
REINGNRFGRDRMSNNWIPPPHPRVFEYFDGAAPQRKADNMPQVNGENTETESQPPTAQV
QDEPELYEKLTSSVEINKEKSDTEADIESEPVVESTETEGT
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atggcacgccagggcgacaaacacccccttgccagccagttgtactcgctaaatgattat
aagccacccatttctaaagctaaaatgacacagatcaccaaggcagcaatcaaggcgata
aagttctacaagcacgttgtacagagtgttgagaaattcattcaaaagtgcaaaccagaa
tacaaggtgcctggcctatatgtcattgactccattgtgagacagtcccggcatcagttt
gggcaagagaaggatgtatttgctccaagattcagcaataacattatcagtactttccag
aatctgtatcgttgtcctggggatgacaagagtaaaattgttagagtgctaaacttatgg
cagaagaataatgtgttcaagagtgaaattattcagcctctcttggatatggcagcagga
attcctcctccagttgtgacccctgtcttgcccagcactacagctgctatgagcaacaat
acaccaggaacacctgtgactccagttactccagccaatgtggtgcagagtttacccgat
ccttgggtatctcagattgctaatacagatacacttgctgctgtagcacagattttacag
agtccccaaggccaacagcttcagcagttgatacagacgctgcagatacagcagcagaaa
cctcagccttcgctacttcaagccctggatgctggtcttgttgttcagttacaggcccta
accgcacaacttacggctgcagctgctgctgccaacacacttactccactggaacaaagt
gtctcttttaataagaagctgatggacaggtttgactttggggaagaacctgaacaaaat
gaagagcctaaaaaggaaactcctacttcccaactgcctttagtaccagaatctgtgaac
aactcgctttttcaccaactagctgaacagctacagcaacaaaatttagaacatctgcga
caacagcttttggagcaacagcagcctcaaaaggcaagccctaacgaggaaaatcaagaa
ggaaattttggttcagagcactctgcgtcaccatcacaagggagcagtcaacaacagttt
ttagaagcggaaacaaatgtagatgattcaatggatattcagcaacaggacatggatata
gatgaagtacaggacgttgctgaagaagagatttttgaacaagaagaaaagaaatcaact
gttcgttcaagatcaagaactcgttcaagatctcgttcaagatcaccaagaaaacgacgg
tctagatcacgatctggttctcgtaagcgtaaacacagaaaacgttcacgctcaagatca
agagaaaggaagaggaagtcatctcgatcatactccagtgaaagaagggctagagaaagg
gaaaaagaacgtcagaaaaaaggattgcctcctatacggtcaaaaacactaagtgtttgc
agtactactctttgggtaggtcaagtagacaagaaggctacgcagcaagatttgactaac
ttgtttgaagaatttggacaaatagaatctattaatatgattcccccaagaggttgtgct
tacgtctgcatggttcatagacaagatgcatatcgtgctcttcagaaacttagttctggg
tcctataaaattggatctaaaattattaagattgcctgggctttgaataaaggtgtgaaa
acagagtacaagcaattctgggatgtggatctgggagtttcatatattccttgggagaaa
gtaaaattggacgatttggagggatttgctgaaggtggaatgattgaccaggagacagta
aatacagaatgggaaacagccaggaactcagaacctgctaaagaaactactcaaactacc
cagactactacagttgataagagcacagttatcacaacgcagacagaagcttacacacaa
ccagtcactatgctgcagattccagtagctccagctgtgcctgctgttagcttagttcca
cctgcgtttcctgtcacaatgtctgtccctcctcctggttatagcgcaattcctcctcca
cccttcttgcgagcaagtttcaacccttcacagccacctccaggttttatgcctccccca
gttcctcctgttgtccctcctcctgttgtcccaccacctgttgtcccaccagttgttcca
acacctttagtacagcctccattaccaattacacaagagacgatgaaggatgttcctttt
actagcctcgttttaccagttggcacagttacaagtaatctagctactccaacgttgtct
gctggaagtgtttttaatcctctgccaatcaacaaaccagaaccagatgaaaagggatca
catcttacagaccttcagatttcttccagtgaaaacaatagagctgtgcaaagtgatgtc
acaagtagctctggacttgttggaggagtgcagccacccagcgtttcaagcagttctggg
cttactggagaaggccagccacctagtgtctcaagtagctctggacttgcaggaggagtg
cagccacccattgtctcaagcagctctggacttgtaggaggagtgcaaccaccaactgtt
tcaagcagttctggtcttgcaggaggagtgcagctacccactgtctccagtagctcttca
cttgcaggaggagttcagccaactagtgtctcaagtagctctggacttatggctggagtg
caaccaccaaatgtctcaagtagctcagggcttctagctggagtgcatccacccagcatc
tcaagtagccctggccttctaccaggaatgcagccacccagtgtctcaagcagctcagga
gttctggcaggagtgcagccaccaagtgtctcaaacaactctggtcttctcataatgcca
ccacccaatgtttcgagtagttctggacttatgggagtgccaccaccaaatatttcaagt
agttctggacttctggcaatgcagcatccagctggtgttcaaaatatgcctcatttaaat
ataagtaatcaaaggatgccaggaatgcctctcatagatatccgtccaggcctaatgccc
cactcacctggaccaaggtttccattaatgcagccaggagtgccaccacagcgtagtatt
cctcctccagcaatccttgatccatctcttcacccaccacctcgaggtccttttcctcca
ggagatatttttaatcaaacagaaagaccttttggagcaccaggaagacaaaatattgat
agcatttctaatccagagaaaagactaccacttggaggggataacatacagcaggaagga
gacagagattatcgttttcctccagtagaaaatcgagataatcttaacagaccatcccca
gtggatgtcagagatcctgttggacgaccaccaattgatccaagagagggtgtaggacgg
cctccagtagatggaagagaacattttgcaagaccacatatagacatgagagaaaatttt
ggaagaccaggtatagataatcttggccgaagagagcattttgctttcaattcagacaag
cactggggacagagaggagattatgatgaaagagagcatcataccttccctatttatggt
ggccctaaaggcttccatgaagacagagagagatttcggcatgtaaactatagatttgat
agtagaagtggtcccagttggaatagaggatttgaaccagatgctcacagagattttgat
gaccgcagaagaccctgggaaagacagagggatagggatgacagagattttaacttttgc
agagaaattaatgggaacaggtttggaagagacagaatgtcaaacaactggatcccccct
ccacatccacgggtttttgaatattttgatggggccgctccccagcgcaaagctgataat
atgccccaggtaaacggtgaaaatacagagacagaaagtcagccaccaactgcacaggtg
caggacgaaccagaactttatgaaaaactgacctcttccgtcgagataaacaaagagaag
agtgacacagaagctgatatagaaagtgaaccagtggtagaaagcacagaaactgagggg
acataa
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