Cygnus atratus (black swan): 118244650
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Entry
118244650 CDS
T09349
Symbol
NFKB1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
cata
Cygnus atratus (black swan)
Pathway
cata04010
MAPK signaling pathway
cata04210
Apoptosis
cata04218
Cellular senescence
cata04620
Toll-like receptor signaling pathway
cata04621
NOD-like receptor signaling pathway
cata04622
RIG-I-like receptor signaling pathway
cata04623
Cytosolic DNA-sensing pathway
cata04625
C-type lectin receptor signaling pathway
cata04920
Adipocytokine signaling pathway
cata05132
Salmonella infection
cata05164
Influenza A
cata05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
118244650 (NFKB1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
118244650 (NFKB1)
04218 Cellular senescence
118244650 (NFKB1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
118244650 (NFKB1)
04621 NOD-like receptor signaling pathway
118244650 (NFKB1)
04622 RIG-I-like receptor signaling pathway
118244650 (NFKB1)
04623 Cytosolic DNA-sensing pathway
118244650 (NFKB1)
04625 C-type lectin receptor signaling pathway
118244650 (NFKB1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
118244650 (NFKB1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
118244650 (NFKB1)
05168 Herpes simplex virus 1 infection
118244650 (NFKB1)
09171 Infectious disease: bacterial
05132 Salmonella infection
118244650 (NFKB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cata03000
]
118244650 (NFKB1)
Transcription factors [BR:
cata03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
118244650 (NFKB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
Ank_2
RHD_dimer
Ank
Ank_4
Ank_3
Ank_5
Death
CSTF2_hinge
Motif
Other DBs
NCBI-GeneID:
118244650
NCBI-ProteinID:
XP_035395635
LinkDB
All DBs
Position
4:complement(6529777..6587886)
Genome browser
AA seq
983 aa
AA seq
DB search
MAGEDPYIMGVSDPQMFAMDQFMGMNTIFNNTGYITSDLPLRTADGPYLQIIEQPKQRGF
RFRYVCEGPSHGGLPGASSEKNKKSFPQVKICNYVGPAKVIVQLVTNGKYVHLHAHSLVG
KFCEDGVCTVNAGPKDMVVGFANLGILHVTKKKVFETLETRMIDACKKGYNPGLLVHPEL
GYLQAEGCGDRQLTEREREIIRQAAVQQTKEMDLSVVRLMFTAFLPDSNGSFTRKLDPVI
SDAIYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFYEEDENGGMWE
GFGDFSPTDVHRQFAIVFKTPKYRDVNITKPASVFVQLRRKSDLETSEPKPFLYYPEIKD
KEEVQRKRQKLMPNFSDGYGGGSGAGGGGMYGGGGGGAGSGFSYPSYGYSAFGGMHFHPG
TTKSNAGMKHGNGLSNCTAEKDRKRSDKPSDKCNMVHDMKMETMERNECRTSGVNEEKEE
DASSCRGEVNEADCRWQDGPFLEKAMQLAKRHCNALFDYAITGDVKMLLAVQRHLTVVQD
DNGDNVLHLAIIHLHTELVKNLLDVIPDLNYNDIINMRNDLYQTPLHLAVITKQAEVVED
LLKAGADVSLLDRHGNSALHLAAAEGDDKILSLLLKHKKIPSMVDLFNGEGLCAIHMVVM
ANSMSCLKQLIAAGVNVNAQEQKSGRTALHLAVELENIPLAGYLLLETDVDVNSTTYDGT
TPLHIAAGRGSTKLAAVLKAAGADPHIENFEPLFDLEDMKDDDDEGIVPGTTPLDMASNC
EVYDILNDKPYKPAAAVSKDLLTQGHIRELNESIKMQLCKVLEVRDPSKNWFTLAQKLGL
GILCNAFRLCPSPSRTLLDNYEVSGGTIEELSAALRQMDHTEAIEIIQNAQSISQRQPHQ
EDNTVEALLSSSPPTFAKRDTGEVYNSKFQDNESTCDSGVETSFRKLSFTYSDSLNSKSS
ITLSKINLSYGHESSVQSNYIAN
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagaagatccctatattatgggagtgtcagatccccaaatgtttgcaatggac
cagttcatgggaatgaatacaatatttaataatacaggttacatcacttcagacttacca
ctacgaacagcagatggaccatatcttcaaatcattgagcagccaaaacagaggggtttt
cgattccgatacgtatgcgaagggccttcacatggtggacttcctggtgcttccagtgaa
aagaacaaaaaatcattccctcaagtcaaaatttgcaattatgttggacctgcaaaagta
attgtccagttagttactaacgggaaatatgtccacttgcatgctcacagcttggtgggt
aaattttgtgaagatggagtatgcacagttaatgcaggacctaaagatatggttgtaggg
tttgcaaaccttggaatacttcatgtcacaaagaagaaggtgtttgaaactctggaaaca
cgcatgatagatgcttgcaaaaaaggatacaacccaggactcttggtgcatcctgaactt
ggctatctgcaggcagaaggatgtggagacagacagctaactgaacgagaaagagaaatt
attcgtcaggcagcagtacagcagactaaagaaatggatctcagtgtggtgcgtcttatg
tttacagcctttctccccgacagcaatggcagtttcacacggaaacttgatcctgttata
tcagatgcaatatatgacagcaaagctcccaatgcctccaacttaaaaattgtaagaatg
gacagaacagcagggtgtgtaacaggaggggaagagatttaccttctctgtgacaaggtt
cagaaagatgatattcaaatacgtttctatgaggaggatgagaatggtggtatgtgggaa
ggctttggagacttttctcctacagatgtacataggcagtttgctattgtgtttaaaaca
cccaagtatcgagatgtcaacatcacaaagccagcctctgtatttgtacaactgcgtcgg
aaatctgatctggaaacaagtgaaccaaagccttttctttactatccggaaatcaaagat
aaagaagaagtgcaaagaaaacgacagaagctcatgccaaacttctcagatggctacggc
ggaggcagcggtgcaggaggaggtggcatgtatggcgggggaggcggcggtgctggctct
gggttcagttatccttcgtacggttactcagcttttggagggatgcatttccaccctggc
acaacaaagtccaatgctggaatgaaacatggcaacggactgtcaaattgcacagctgaa
aaagataggaagaggtctgataaaccaagtgacaaatgcaacatggtgcatgacatgaaa
atggaaactatggagaggaatgagtgcagaacctctggtgttaatgaggagaaggaggag
gatgcttcatcctgtagaggtgaagtaaacgaagcagattgcaggtggcaagatggtccc
ttcctggagaaggcaatgcagcttgccaagcgccattgcaatgctctctttgattatgct
ataactggagatgtgaagatgctgttggctgttcagcgccatctcaccgttgtccaggat
gataacggagacaacgtccttcatttagcaattatccaccttcatacagaactggttaaa
aacctcttggacgtgatcccagatttgaattataacgacattatcaacatgaggaatgac
ctttatcagacccccttgcacctggcagtaatcacaaagcaggcagaggtggtggaagac
ttgctgaaggctggagcagatgtcagccttctggatcgccacggtaattctgccctgcat
ttagctgctgctgaaggagacgacaagattttgagtctactcctcaagcataagaagata
ccttcgatggtcgaccttttcaatggtgaaggtctctgtgcaattcacatggtggtgatg
gcaaacagcatgtcctgtctcaaacaactgattgctgctggagttaatgtcaatgctcag
gaacaaaaatctggacgaactgcattgcatttagctgttgaactagagaacatccccttg
gcgggctacctgttgcttgagactgatgtagatgtgaacagcactacatatgatgggaca
acacctcttcacatagcagctggaaggggctctacaaaattggcagcagttctcaaagca
gcaggtgcagatcctcacattgagaactttgagccactgtttgatctagaggatatgaaa
gatgatgatgatgaaggaatagtacctgggacaacaccactggatatggcatccaattgt
gaggtgtacgacatattaaatgacaagccttacaaaccagcagcagcagtttcgaaggac
ttactgacacaaggacatataagagagctgaatgaaagcatcaagatgcagctttgcaaa
gtattagaagtacgtgacccaagcaaaaactggtttactctagcacaaaagctgggtctt
ggcatactttgtaacgccttcaggttgtgcccttccccatcgagaactctgctagataac
tatgaggtttctggtggtacaattgaagagctgagtgctgctttgagacagatggatcac
acggaagccattgaaatcattcagaacgcacaatccatctcgcaaaggcagcctcaccag
gaggacaacaccgtagaagctcttctttcatcatctccgcccacctttgcaaagagggac
acaggtgaagtttataatagcaaatttcaagacaatgaaagcacatgcgacagtggtgtg
gagacctccttccgcaaactgagctttacttactcagactctctgaacagcaagtcatca
ataacactcagcaaaatcaacctcagctatggacatgaaagctcagtgcaaagcaattat
atagctaactag
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