KEGG   Cygnus atratus (black swan): 118244677
Entry
118244677         CDS       T09349                                 
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
cata  Cygnus atratus (black swan)
Pathway
cata03420  Nucleotide excision repair
cata04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:cata00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    118244677 (DDB1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    118244677 (DDB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cata04121]
    118244677 (DDB1)
   03400 DNA repair and recombination proteins [BR:cata03400]
    118244677 (DDB1)
Ubiquitin system [BR:cata04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     118244677 (DDB1)
DNA repair and recombination proteins [BR:cata03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      118244677 (DDB1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      118244677 (DDB1)
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd CPSF_A Beta-prop_RSE1_1st Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 118244677
NCBI-ProteinID: XP_035395698
LinkDB
Position
5:35648938..35666317
AA seq 1140 aa
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
TAVMELFRPKGESKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRENKELKAFNIRLEELQVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDCHRE
TDNTLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPNGKNISVASCNSNQVVVAVGRALYYLEIRPQELRQISCTEMEHEVAC
LDITPLGDTNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLSLETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDASGGTTALRPSASTQALSSSVSTSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcctacaactacgtggtcacggcccagaagccgacggccgtcaacggctgcgttacc
gggcacttcacctcggcggaggacctgaacctgctgatcgccaagaacacgcggctggag
atctatgtggtgacggccgaggggctgcggcccgtcaaggaggtgggcatgtatggcaag
accgccgtcatggagctcttccgccccaagggcgagagcaaggatctgctcttcatcctg
acggccaagtacaacgcctgcatcctggagtacaagcagaacggggacagcatcgacatt
atcacgcgcgcccacggcaacgtgcaggatcgcattggtcgtccctcggagaccgggatc
atcggcatcattgacccggagtgccggatgattggcctgcggctctacgatggcctcttc
aaggtcatccccctggaccgggagaacaaggagttaaaggcttttaacatccgcctggaa
gagctccaggtcatcgatgtgaagttcctctacggctgccaggccccgaccatctgcttt
gtctaccaggaccctcagggtcggcatgtcaagacgtacgaggtgtctctgcgcgagaag
gaattcaacaaaggtccttggaagcaggagaacgtagaggctgaagcctccatggtcatc
gcagtgccagagccttttggaggtgcaatcatcattgggcaggagtccatcacctatcac
aacggagataaatacctggctatagctccacctatcatcaagcaaagtacaatcgtgtgc
cacaaccgcgtggatcccaatgggtcccgttacttgctgggggacatggaaggacgcctc
ttcatgctgcttctggagaaggaggaacagatggacggcacggtcaccttgaaggacctg
cgtgtggaactgctcggtgagacatccattgcagagtgcttgacctacctggacaacggt
gtggtgtttgttggctctcggcttggggattcccagcttgtgaagctcaacgtggacagc
aatgagcagggctcctatgtagtggctatggagaccttcaccaacctcggtcccatcgtc
gacatgtgtgtagtagacctggaaagacaaggccaagggcagctggtcacgtgctcaggt
gcgtttaaggaaggttcgctacggatcatccggaacggcattgggattcacgagcatgcc
agcattgacctgccaggcattaaaggcttgtggcccctgaggtcggattgtcatcgtgag
acggacaataccttggtgctgtcctttgttggccagaccagggttcttatgttaaacgga
gaggaggtagaagagacggagctcacagggtttgtggatgatcagcagactttcttctgt
ggcaatgtggcacatcagcaattgatccagatcacctctgcctctgtgagactggtcagt
caggagcccaaagccctggtgagcgagtggaaagagcccaacgggaagaacatcagcgtg
gcttcctgtaacagcaaccaggtggtggtggctgtgggacgagccctgtactacctggag
atccgaccccaggagctcaggcagatcagctgcacagaaatggagcatgaggttgcctgc
ctggacatcactcctttgggggacactaatggcatgtccccactgtgtgcgatcgggctc
tggactgacatctccgcccgcatcctgaagctgccttcgtttgagctgctgcacaaagag
atgctgggcggagaaattatccctcgctccatcctgatgacgacctttgagagcagccat
taccttctgtgtgccctgggagatggggcgctcttctacttcgggctcagtctcgagaca
ggcttgctgagtgaccgcaaaaaggtgacccttgggacccagcccactgtcctgaggact
ttccgctctctgtccaccaccaacgtgtttgcctgctctgaccgccccaccgtcatctac
agcagtaaccacaagctggttttctccaacgtcaacctgaaggaggtgaactacatgtgt
cccctcaactcggatgggtatcccgacagcttggcactggccaataacagcactctgaca
atcggcaccatcgatgagatccagaagctgcacatccgcacggttcccctctacgaatca
cccaggaaaatttgctaccaagaggtatcacagtgttttggtgtgctctcaagtcgcatc
gaggtgcaggatgccagtgggggcaccactgcgctcagacccagtgccagcacccaggcc
ctgtccagcagcgtaagtaccagcaagctgttctccagcagcacagcaccgcacgagacg
tcctttggagaggaggtggaggtgcacaacctgctcatcatagatcagcacaccttcgaa
gtgcttcatgctcaccagtttctgcaaaatgaatatgccctcagcctggtctcctgcaag
ctcggcaaggatccaaacacctacttcattgtgggcactgccatggtgtatcctgaggag
gcagagcccaagcagggccgcatcgtcgtcttccactactccgatgggaaactgcagagc
ctggctgagaaggaggtgaagggagctgtatattccatggtggagttcaacgggaagctg
ttagccagcatcaacagcacggtgcgcctgtatgagtggacagctgagaaggagctgcgc
acagagtgcaaccattacaacaatatcatggcgctctacctgaagaccaagggagacttc
atccttgtgggagatctgatgcgatctgtcctgctccttgcgtacaagcccatggaagga
aactttgaggagattgcccgggacttcaatccaaactggatgagtgccgtagagatcctg
gatgatgacaacttcttgggagcagagaacgccttcaacctgtttgtgtgccagaaggac
agtgctgccacaaccgacgaggagcgccagcacttgcaggaagtggggctgtcccacctg
ggagagtttgtcaacgtcttctgtcacgggtccctggtcatgcagaaccttggcgagaca
tccactccgacacaaggatcggttctctttggcacagtcaacggcatgataggactggtg
acctcgctgtcggagagctggtacaacctgctgctggacatgcagaacaggctgaacaaa
gtcatcaagagcgtgggcaagatcgagcactccttctggaggtcatttcacacggagcgc
aagacagaaccagctacggggttcatcgatggtgacctgatcgaaagcttcctggacatc
agcaggcccaagatgcaggaggtggtggcaaacttgcagattgacgacggcagtggcatg
aagagggaggccaccgtagatgacctgataaagatcgtggaggagctgacccggatccac
tag

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