Cygnus atratus (black swan): 118245010
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Entry
118245010 CDS
T09349
Symbol
SOX5
Name
(RefSeq) transcription factor SOX-5 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cata03000
]
118245010 (SOX5)
Transcription factors [BR:
cata03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
118245010 (SOX5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Cob_adeno_trans
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
118245010
NCBI-ProteinID:
XP_050571270
EnsemblRapid:
ENSACYG00000006293
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All DBs
Position
1:complement(77449305..78090997)
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AA seq
773 aa
AA seq
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MLTDPDLPQEFERMSSKRPASPYGEADGEVAMVTSRQKVGEEESDGLPAFHLPLHVSFPN
KPHSEEFQPVSLLTQENCGHRTPTSQHNTMEVDGNKVMSSFAPHNSSTSPLKAEEGGRQS
GESLSSTALGTPERRKGSLADVVDTLKQRKMEELIKNEPEETPSIEKLLSKDWKDKLLAM
GSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQRQQMEL
AKQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAAAAQQGFL
LPPGFSYKAGCSDPYPVQLIPTTMAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGGKIPG
IPQGNLGAAVSPTSIHTDKSTNSPPPKSKDEVAQPLNLSAKPKTSDGKSPTSPTSPHMPT
LRINSGASSLKSSVPATLASPSARANTIDILSSITSSGYLNDHDAVTKAIQEARQMKEQL
RREQQVLDGKVAVVNSLGLNNCRAEKDKTTLETLTQQLAVKQSEDGKFSHTMMDFNMSGD
SDGSAGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKIL
GSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMR
NRRQEMRQYFNVGQQAQIPIATAGVVYPGAIAMAGMPSPHLPSEHSSVSSSPEPGMPVIQ
STYGIKGEEPHIKEEMQTEDVNGEIYDEYDEEEDDPDVDYGSDSENHIAGQAN
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgctcactgaccctgatttacctcaggagtttgaaaggatgtcttccaagcgaccagcc
tctccgtatggggaagcagatggagaggtagccatggtgacaagcagacagaaagtggga
gaagaggagagtgacgggctcccagcctttcaccttcccttgcatgtgagttttcccaac
aagcctcactctgaggaatttcagccagtttctctgctgacgcaagagaactgtggccat
aggactcccacttctcagcacaacacaatggaagttgatggcaataaagtgatgtcttca
tttgccccgcacaactcatctacctcacccttgaaggcagaagaaggtgggcgtcagagt
ggagagtcattgtccagcacagccctgggaacccctgaaaggcgcaaagggagcctagcg
gatgttgtagacacccttaagcaaagaaaaatggaagagctcatcaaaaacgagccagaa
gaaactcccagtattgaaaagctactatcaaaggactggaaagacaagcttcttgccatg
ggatcagggaactttggagaaataaaagggactccagaaagcctcgctgagaaagaaagg
cagctcatgggtatgatcaatcagctgaccagtttgcgtgaacagctgctagcagctcac
gatgaacagaaaaaactggctgcatcgcagatcgagaaacaacgccaacaaatggagctg
gctaagcagcaacaagaacagattgcaagacaacagcagcagctcctgcagcagcaacac
aaaattaaccttcttcagcaacagatccagcaggtccagggtcagctgcctccattaatg
attcccgtattccctccagaccaacgaaccctagcagcagctgctcagcaaggattcctt
cttcctcctggtttcagctacaaagcgggatgcagtgacccctaccccgttcagctgatc
ccgactaccatggcagctgctgctgcagcaacgccgggcttaggcccgctccaactgcag
cagttgtatgctgcccaacttgctgcaatgcaagtgtctccgggaggcaagatacctggc
ataccccagggtaaccttggtgctgctgtatcgcctaccagcattcacacagacaagagc
acaaacagccctccacccaaaagcaaggatgaagtggcccagcctctgaacctttcagcc
aaacccaagacatctgatggcaagtctcccacgtcacccacctctcctcatatgccaact
ctgagaataaacagtggggcaagttcactaaaatcctctgtgccagcaacattagctagt
ccttcggccagagctaacacaatagacatcctttcttctatcacgtcgtcaggttattta
aatgaccacgatgctgttaccaaggcaatccaggaggcccggcagatgaaggagcaactt
cggagagaacaacaggtgctggacgggaaggtggctgttgtgaatagcctgggtctcaat
aactgcagggcagaaaaggacaaaacaacactggagaccctgactcagcagctggcagta
aaacagagtgaagacgggaagtttagccacacgatgatggatttcaacatgagtggagat
tctgatggaagtgcaggagtttcagaatctagaatttatcgggaatccagagggcgtggt
agtaatgagccccatatcaagcgcccaatgaatgcattcatggtgtgggctaaagatgaa
cggaggaagatccttcaagccttccctgacatgcacaactccaatatcagcaagatacta
ggatctcgctggaaagctatgacaaacctagagaagcagccatactatgaggaacaggcc
cgactcagcaagcagcacctggagaaatacccagactacaaatacaagccaaggccgaag
cgtacctgccttgtagatggcaaaaaattacgcattggcgagtacaaggctataatgcgc
aacagacgccaggagatgaggcagtattttaatgttgggcaacaagcacagattcctatt
gccaccgcaggcgtagtttacccaggagccatcgccatggcaggaatgccttccccacac
ctgccctctgagcactcgagcgtctccagcagcccagagcctgggatgcccgtcatccag
agcacttacggcatcaaaggcgaggagcctcacatcaaggaagagatgcagaccgaggat
gtcaatggagaaatctacgatgagtatgatgaggaagaggatgaccctgatgttgactat
ggcagtgacagtgaaaatcacatcgcggggcaagccaactga
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