Cygnus atratus (black swan): 118245274
Help
Entry
118245274 CDS
T09349
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03013
Nucleocytoplasmic transport
cata03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118245274 (UPF3B)
03015 mRNA surveillance pathway
118245274 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cata03019
]
118245274 (UPF3B)
Messenger RNA biogenesis [BR:
cata03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118245274 (UPF3B)
mRNA cycle factors
P-body specific factors
118245274 (UPF3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
118245274
NCBI-ProteinID:
XP_035397192
LinkDB
All DBs
Position
13:6599633..6606947
Genome browser
AA seq
477 aa
AA seq
DB search
MKEDKENARPKERRGGPGPAAGAGAGAGAGSEGRAGGAELERLERPKDKKEALSKVVIRR
LPPSLTKEQLEEHLQPLPEHDYFEFFANDSSLYPHMFSRAYINFKNQEDIVLFRDRFDGY
VFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTGTIEDDPEYKKFLESYSADDEKLTST
PETLLEEIEARNKELIAKKTTPLLNFLKNKQRLREEKREERRRRELERKRQREEERRKWK
EEERRKRKEAEKLKKVDRCPEKERDRSKEEPKIKLLKKPEKDEKDLEKKEKSKKLEKETL
REEKNASSASAKRSDGETKEEKAKKSEDECVKDYRDRDRDFERDREYERAQREKLRRQEE
ERRRQKERFEKEKVFRRKEEEVKKERDLLREKGKKSDLTDFTSGMDKSEKVTKDDKKEDT
IKRDRIRNKDRPAMQLYQPGARSRSRLCQYEDSAAKPTDQGADKKQESETSNMKEEE
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggacaaggagaacgccaggcccaaggagcgccgcggggggcccgggcccgcc
gctggggccggggccggggccggggccggctcggagggcagggccggcggcgccgagctg
gagcggctggagcggcccaaggacaagaaggaggcgctgagcaaggtggtgatccggcgg
ctgccgcccagcctcaccaaggagcagctggaggagcacctgcagcccctgcccgagcac
gactacttcgagttcttcgccaacgactccagcctgtaccctcacatgttctcaagagcc
tacatcaacttcaaaaaccaggaggacatcgtgctcttcagggatcgctttgacggctac
gtgttcgttgatcacaaaggtcaggagtatgctgccatcgtagagtttgcacctttccaa
aaagctgcaaaaaagaagagcaagaaaaaggatgccaaaactgggactattgaagatgat
ccagagtacaagaagtttctggaaagttacagtgcagatgatgaaaagctaacctctact
cctgaaactttgttggaggaaatagaggcaagaaacaaagagctaatagctaaaaagact
actcccttattgaacttcttgaaaaataaacagagactgagagaggagaaaagagaggag
aggaggaggagagaactggaaagaaaaagacaaagagaagaagaaagaagaaaatggaaa
gaggaggagagaaggaagagaaaagaagcagaaaaactgaagaaagtagacagatgtcca
gaaaaagaaagagacagatcaaaagaagaaccaaagattaagctacttaagaagcctgaa
aaagatgaaaaagacttggagaaaaaagaaaaatccaagaaactggaaaaagagactctg
agggaggaaaaaaatgcgagtagtgcatctgccaaacgatctgatggggagacaaaagaa
gagaaggcaaaaaaatcagaagatgagtgtgtaaaggactacagggaccgagatagagat
tttgaaagagacagagaatatgagagagcacagagggagaaactgagacgccaggaagaa
gagcgtcggaggcagaaagagcgctttgagaaagagaaggtttttagaagaaaagaggaa
gaggtgaaaaaggaaagagacttgctcagagaaaagggaaagaagagtgatcttacagac
tttaccagcggcatggacaaatctgagaaagtaaccaaagacgataaaaaagaggataca
attaagagggatcgtatcagaaacaaggatcgtccagcaatgcagctgtaccagccagga
gcccgaagccgaagcagattgtgtcagtacgaagacagtgctgccaagccgacagatcag
ggagcggataagaaacaagagagtgagaccagtaacatgaaggaagaggagtga
DBGET
integrated database retrieval system
