Cygnus atratus (black swan): 118245304
Help
Entry
118245304 CDS
T09349
Symbol
JMJD1C
Name
(RefSeq) LOW QUALITY PROTEIN: probable JmjC domain-containing histone demethylation protein 2C
KO
K11449
jumonji domain-containing protein 1C [EC:1.14.11.-]
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cata03036
]
118245304 (JMJD1C)
Chromosome and associated proteins [BR:
cata03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
118245304 (JMJD1C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tudor_KDM3B
PWWP_KDM3B
DUF7030
JmjC
Motif
Other DBs
NCBI-GeneID:
118245304
NCBI-ProteinID:
XP_035397282
LinkDB
All DBs
Position
7:27248066..27406874
Genome browser
AA seq
2535 aa
AA seq
DB search
MAVETRPELVGKRFLCLGGNGGGEEPAESGRWRAGVIRAVSQRDSHSVELAVYVEFDDLE
WEKREWVKVYEDFATFLVEYQLVWAKRKDPSQTQGSKIKQIQWPALTFKPLVGKSVYNSI
TAVEFLVDKQLDFITEDSAFQPYQDDVDSLNPVLRDNPQLHEEVKAWVKEQKVQEIFMQG
PYSLNGYRVRVYRQDSATQWFTGIITHHDLFTRTMVVMNDQVLEPQNVDPSMVQMTFLDD
VVHSLLKGENIGITSRRRSRSNQNSNTVHGHYTRAQANSPRPAMNSQTAAPKQNSHQHQQ
QRNTRPNKRKGSDSSMPDEEKMKEERYDYIGRGENPKNKNKHFLSKRRKPEEDEKKLNMK
RLRTDNISDYSESSDSEISNKRLTDSSSEQNSENELKSKNTSKINGEEGKSQTIEGAEQT
LTDRRSPWDEIQEDKTREETERLKSSVLDQQEKPSLHAAEQPTPYEQNSKDPHVQECNAE
KHHAAELRNEQFVPRPPTPKCVLDITNENKSEKESQDNAASTFGLQTVQKTESHSSDLKQ
QFATANFLEARKQDADQSWVSCVVNKMDLIQPGVVKALPVNEHLNPEKEKVQYGSFMSSL
NVASLAEESKLRKQSPVPDSVKSKPSASVDHPKTKSPDVKPKFTQSSDTVKSKVSSQNSH
TTGLTRSANKTDHDLPRSSFHPVPARVSALEATKSPLIIDKNEHFTVYRDPTLIGQETGT
NHISPYLHQHNYPLHSSSHRTCLNPNAHHPALTGSSHLLAGSSTQTPLSAINTHPLSTAP
HHSVHHPHLLPAVLPGVPAASLLGGHPRLETAHASSLSHLALAHQQQQQMLQHQSPHLLG
QAHPSASYNQLGLYPIIWQYPNGTHAYSGLGLPSSKWVHPETPVNAEASLRRNTPSPWLH
QPTPVTSADSLGLLSHIPVRPSSADPLRPLKLAAHSSPPLSKSIVEHHKEELERKAFIEP
LRSVTTAPIKTELEQSRTQTAKESHMQRHFADPMLNQLPRPPQETGERLSKYKEEHRRIL
QESIEVAPFTAKIKALEGERENYSRVTSLSSSPKSHSVKYEKDAERSVSELYKMKHSVPQ
SLPQSNYFTTLSNSVVNEPPRSYPSKEASSTYVEKQTNCPSTAASSQSLPSYISSLSKPP
PLIKHQPESEGSASKMPEQLSQSVQSHSVNSFRNDSRSPTQLSVSSSNTLRSMPALHRAP
VFHPPVHQNLEKKESSYSSLSPPTLTPVQPVNAGGGKIQELQKPPTLVPEPKEAQTVYKG
TSEQNLSEMWKSNNAPNNEKVDWHVERMSGKSQSATASVIVRPPSSTKYDSVAVMQSASK
DRASERSSAVTNQADCLKTAEARETGRIILPNMNSDSARTQYEKKFPAVSQGSVPRSVTP
TTTMICSTKTDVTASAATTTSVSSWGSSEVTYSLSNTVLACAPLECAASRAASQAAAQAQ
ECKVSAPAPTTPAPGKTGSAAQPSSGFSTSTDFVHLKKHKAALAAAQFRSSNTSETEANS
VKNQTFSTSLPLDSAIVCNTINKANSVGSGQTSQTSQPNYHTKLKKAWLTRHSEEDKNTN
KKENSGNSVSEIIKPCTVNLIASTSNDLQNNIDSKILADKFVKEDKHPRRKAKRTYESGS
ESGDSDESESKSEQRTKRQPKPTYKKKQNDLQKKKGDAEEEVKPNGVLSRSAKEKSKLKL
QSSSNSTGIPRSVLKDWRKVKKLKQTGESFLQDDSCSEIGPNLQKCRECRLIRSKKGEEP
THSPVFCRFYYFRRLSFSKNGVVRIDGFSSPDQYDDEALSLWTHENYEDDELDLETSKYI
LDIIGDKFCQLVTSEKTAMSWVKKDAKIAWKRAVRGVREMCDACEATLFNIHWVCXKCGF
VVCLDCYKAKERKSSRDKELYAWMKCVKGQPHDHKHLMPTQIIPGSVLTDLLDAMHNIRE
KFEIKSHCQCTSKQNTQAGKLPAMNGVSQVLQNVLNHSNKISLCMPESQQQNTPQKSETN
GNTSPRSDVSTDSKLTPPESQSPLHWLADLAEQKAREEKKENKECPSGKHSKEEKDQDNL
ESQNCRSSPPASQNNEQGSTLRDLLTTTAGKLRLGSTDAGIAFAPVYSTGTPSGKSGRTM
PNILDDIIASVVENKIPPNRAPKINVKSEIKDEPKDDRKCIQDDGNKLYSDIQYSWICDK
HVLWLRDHKNINNWKLFKECWKQGRPVLVSGMHKKMNFSLWKAESISLDFGNQQADILNC
KDSIISNTNVKEFWDGFEDVSKRQKVKNGETALLKLKDWPSGEDFKAMMPARYEDLLKSL
PLPEYCSPEGKLNLASHLPGFFVRPDLGPRLCSAYGVAATKDHDIGTTNLHIEVSDVVNI
LVYVGIAKGNGVLSKSGVLKKFEEEDLDDLLRKRLKDSSELPGALWHIYAGKDADKIREF
LQKIAKEQGLEVLPEHDPIRDQSWYVNKKLRQRLLEEYGVKTCTVIQFLGDAIILPAGAL
HQVQNFHSCVQVTEDFVSPEHLVQSFHLTQELRLSKEEINYDDKLQVKNILYHAVKEMVR
ALKIHESEMEDMEEN
NT seq
7608 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggagacgcggccggagctggtggggaagcggttcctctgcctcggcggcaac
ggcggcggcgaggagccggcggagagcgggcgctggcgggcaggggtcatccgcgccgtg
tcgcagcgggactcgcacagcgtcgagctggcggtatatgtggaatttgatgaccttgaa
tgggaaaagcgagaatgggttaaagtttatgaagattttgcaaccttcttggtggagtac
cagctggtctgggcgaaaagaaaggacccaagccagactcagggatcaaagatcaaacaa
attcaatggcctgcattgacattcaagcccttggttggaaaaagtgtatacaattcaatt
actgcagtagaattccttgtggacaaacagctggattttataactgaagatagtgccttt
cagccctatcaggacgacgtagacagtctaaacccagttctcagggataacccgcagtta
catgaggaagtaaaagcctgggtaaaggaacaaaaggttcaggagatttttatgcaaggt
ccgtactccttaaatggttatagggtgagagtgtacagacaggattctgccacccagtgg
ttcactgggatcattactcatcatgatctcttcacccgcactatggttgttatgaatgac
caggtgttagaacctcagaatgttgatccttctatggttcagatgacctttctagatgat
gttgttcactctttgttgaaaggtgaaaatattggcatcacttcacgccggcggtctcgt
tccaaccagaacagcaacacagttcacggtcattatacacgtgcacaagcaaatagtccc
agaccagcaatgaattcccaaactgcagcaccaaaacagaattctcaccagcaccagcag
cagaggaacactcggccaaataagagaaaaggctcagatagtagcatgcctgatgaagag
aagatgaaggaagaaagatatgattacataggtcgaggagaaaaccccaaaaacaaaaat
aaacatttccttagtaaaagaagaaaacctgaagaggatgaaaagaaattaaatatgaag
agactgcggacagacaatatctcagattactctgagagcagtgactcagaaatttcaaat
aaaagattaacagattcgtcctcagagcaaaattcagaaaatgagttaaaaagcaagaac
acttcaaagataaatggagaagaaggaaaatcccaaaccattgagggagcagagcagaca
ctaacagataggcggtctccatgggatgaaatacaggaggataaaacacgtgaagagaca
gaaagactgaagtcatccgtcttggatcagcaggaaaagccttcactccatgcggcagag
cagccaacaccttatgagcagaattccaaggatccacatgttcaagagtgcaatgcagaa
aaacatcatgctgcagaattaagaaatgagcagtttgtacccagacctcctactccgaaa
tgtgttcttgatataactaacgaaaacaagtctgaaaaggagagccaggataatgctgca
agtacctttggtttgcaaacagttcagaaaacagaatcgcacagcagtgatttaaaacag
cagtttgcaactgcaaatttccttgaagcacgaaaacaggatgctgatcaaagttgggtt
agctgtgttgttaacaaaatggatttgatacaacctggggttgtgaaagcattaccagta
aatgaacatttaaatcctgaaaaggaaaaagtgcagtatggctcgtttatgtcttcgtta
aatgtagcttctctagcagaagagagtaaactgcgtaaacaaagtccagtccctgattct
gtgaagtccaaacctagtgcttcagttgatcatcctaaaacaaagtcacctgatgttaag
cctaaattcacccaatcttctgatactgtgaagtctaaggttagttcccaaaacagccat
actactggattaacaaggtcagccaataaaactgatcatgatttgcctaggtctagtttt
catccagttccagctagagttagtgctctagaagctactaaaagtcctcttatcattgac
aagaatgaacatttcacagtgtacagggaccccactctgattggacaagaaacaggaact
aatcacatttcaccttatttgcatcagcataattatcctctgcattcctcatcccaccga
acctgtttaaatccaaacgctcatcatcctgcattaactggttcatcccatctgctagct
gggtcttcaactcagactcccttgtccgctattaacactcacccccttagtaccgcacct
caccattctgttcatcaccctcatctacttcctgcagtgttacctggagtgcctgctgcc
tccttgctgggtggccacccgcgactagagactgctcatgctagcagcctaagccatttg
gcattagcacaccagcagcagcaacagatgttacaacaccagtctccacatcttctcgga
caagctcatccttctgcttcctataatcagctagggctttatccaattatttggcagtat
ccaaacggaacacatgcttactcaggactcggtctgccctcctcgaaatgggtccacccg
gaaactcctgttaacgcggaggcttccttgagaaggaatactcccagtccgtggttacac
cagcccacccctgtgacctcagctgacagccttggattactgagtcacattcctgtgcga
ccgtccagtgcagatccccttcggcctctcaaactggcagcgcattctagcccaccgttg
tccaaaagtatagtagagcatcacaaagaagagctggagaggaaagcatttatcgaacct
ttacgttccgttacaactgcaccaataaagacagagttggagcaaagcagaacacagaca
gcaaaggagagccatatgcagagacattttgcagatccaatgttgaaccagctgccaagg
ccaccacaggagacgggggagcgactgagcaaatacaaagaagaacatagacggatactc
caagaaagtattgaagttgctccttttacagctaaaataaaggccctggagggagagaga
gagaactactctagggtaacatccttatcttcgagtcccaaaagccattcagtaaaatat
gagaaagatgcagaacgctctgtgtcagaactgtataaaatgaagcattcggtcccacag
agcttgccgcagagtaactatttcaccaccttgtctaacagcgtagtaaatgaaccaccg
agatcatacccatccaaggaagcttcaagtacgtatgttgagaagcagactaattgtcct
tcaacagcagctagttcccagtctcttccttcttacatttcttctctttcaaaacctccc
cctttaattaagcaccaacctgagagcgaaggctctgcaagcaagatgcctgagcagctt
tcacaatcagtgcagtctcactcagtcaattcttttagaaatgacagcagaagccctact
cagctgtcagtctcatcttcaaatactctccggagtatgcctgccttgcacagagccccc
gtgtttcacccccctgtgcaccagaacctagagaagaaggaaagcagctacagcagcctt
tcacctcccaccctgactcctgttcaacccgttaatgctggtggtggtaaaatacaagaa
ttgcagaaaccaccgactttagtccctgaacctaaggaagctcagactgtttacaagggc
acttctgaacagaatttatccgaaatgtggaagtctaacaatgccccgaataacgaaaaa
gtggactggcatgttgaaagaatgagcggaaagtcgcagtccgccacggcatctgttatt
gtgcgtcctccttctagcacgaaatatgatagcgtagccgtaatgcagtcagcttccaaa
gatcgagccagtgagagatcttcagctgtgacaaatcaagcagattgcctgaaaacagcg
gaagccagagagactggaagaatcattctgccaaatatgaactcagacagtgctcgcaca
cagtatgaaaagaaatttccagctgtctcgcaaggcagcgttcctcgttctgtcacccct
accacaactatgatctgcagtactaaaacggatgtaactgcatcagcggctacgactacc
agcgtgtcaagctggggcagctccgaagtgacttactccttatcgaacacggtcttggcc
tgcgcgccgctggagtgtgctgcctcgagagcagcaagtcaggcggcggcacaggcccag
gaatgcaaggtcagcgccccggcgccaactacgcccgcccctggcaagaccggcagcgct
gctcagcccagctcgggattctccacctccactgacttcgtccatttgaaaaagcacaag
gcagcattggctgcggctcagtttagaagtagtaacaccagtgagacagaggccaactct
gtgaaaaatcagacattttcaacctctctccccctagacagtgctatcgtctgcaataca
ataaacaaagcaaactctgtaggcagtgggcaaacttcccagacaagtcagccaaactac
cacactaaactgaaaaaggcttggctaacaagacattcagaggaagataaaaacactaat
aaaaaggagaattcagggaacagtgtttcagaaattattaagccatgtactgtcaattta
atagcttctacatcaaatgatttgcaaaataacatagatagtaaaatcttggcagataag
tttgtgaaggaagataagcaccctaggagaaaagcaaaacgaacttacgagtctggctct
gaaagtggagactctgatgaaagtgagagcaagtcagagcaaaggactaaacggcagccc
aagccaacttacaaaaagaaacaaaatgatttgcagaaaaaaaagggtgatgcggaggaa
gaagtaaaaccgaatggtgttcttagccggagtgccaaagaaaaaagcaagctgaagtta
cagagcagcagtaacagcactggtatacctcgctcagtgttaaaagattggcgcaaagtg
aagaagctgaagcaaacaggagagtccttcttgcaggatgattcttgctctgaaatagga
ccaaatttgcagaaatgcagagaatgtaggctaataagaagcaagaaaggtgaagaacca
actcactcaccagtgttttgtagattttactactttcgacggttatcttttagtaagaat
ggagtggttaggatagatggtttctcctctcctgatcaatatgatgatgaggcgctgagt
ttatggacacacgaaaactatgaagatgatgaactggacctagaaacttctaaatatatt
ttagatatcataggagataaattttgtcagttggtaacatccgagaaaacagccatgtcc
tgggtgaagaaagacgccaaaattgcatggaagagagcggtgagaggagtccgtgagatg
tgtgatgcatgcgaagccacattatttaacattcattgggtctgcncaaaatgtggattt
gtggtctgcctggattgttacaaggcaaaggaaagaaaaagttctagagataaggagttg
tatgcctggatgaagtgtgtgaagggacagcctcatgatcacaaacacctgatgccaaca
caaattattccaggctctgttttgacagatcttctagatgctatgcacaatattagagaa
aaatttgaaattaaatcccattgtcagtgtaccagcaagcagaacacgcaagctggcaag
ctccctgcaatgaatggtgtgtctcaggttttgcagaatgtccttaatcacagtaataaa
atttctctgtgcatgcctgagtctcaacagcaaaatacccctcaaaagtctgagacaaat
ggtaatacaagtccaaggagtgatgtgagcacagacagcaagttaacaccccctgaatcg
cagtcaccgctgcattggttagctgatcttgcagagcagaaagccagagaagaaaagaaa
gagaacaaagagtgtccttctggaaaacattcaaaggaggagaaagaccaggataatttg
gagtcccaaaactgtagaagctcccctcctgcatcccagaacaatgagcagggctcaacc
ttacgagatttgttaacaacaacagcaggcaaactgcgtctaggttctacagatgctggt
attgcttttgctccagtttactctacaggaacaccaagtggcaagagtggacggactatg
ccaaacattctcgatgacataattgcttcagtggtagaaaacaagattccaccaaataga
gcgccaaagataaatgtaaaatctgaaataaaagatgagccaaaggatgacagaaaatgt
attcaggatgacggcaacaagttgtacagtgatattcagtattcttggatctgcgataag
catgttttgtggctcagagaccataaaaacattaacaactggaagcttttcaaagagtgc
tggaaacaggggaggcctgttctagtgtccggtatgcataagaaaatgaacttcagcctg
tggaaagctgagtcaattagtctagattttggaaaccagcaagctgatatcttgaattgc
aaagacagtattatttcaaacaccaacgtcaaagagttctgggatggttttgaagatgtt
tcaaaacggcagaaagtaaaaaatggggagacagctctactaaaattgaaagattggcct
tctggtgaagatttcaaggctatgatgccagcaagatatgaggacttactgaaaagttta
cccttgcctgaatactgtagtccagaaggaaaactaaatttggcttctcatctgccagga
ttttttgtccgtccagatttgggacccagactatgcagtgcatatggtgtggctgctact
aaagaccatgatataggaactacaaatctccatattgaagtttctgatgtagtgaacatc
cttgtttatgttggcatagcaaaaggaaatggagtactttccaaatcaggggtactgaag
aagtttgaagaagaagatttggatgaccttttaaggaagcggttgaaagattcaagtgaa
ttacctggtgctttatggcacatttatgctggcaaagatgctgacaagataagggaattt
ctgcaaaagatagcaaaagagcaaggcttagaagttttaccagagcatgatccgatacgt
gatcagagttggtatgtgaacaaaaagcttcgccaaagacttcttgaagaatatggagta
aaaacctgtacggttattcagtttcttggtgatgctattattctaccagcaggagcactt
catcaggtgcaaaattttcacagctgcgttcaagtaactgaagactttgtgtctccagaa
catcttgtacagtcatttcatttaacgcaggagctgcggctgtcaaaggaagaaatcaat
tatgatgataaactgcaggttaaaaatatcttgtatcatgcagttaaagaaatggtgaga
gcgctgaagattcatgaaagtgaaatggaagatatggaagagaactaa
DBGET
integrated database retrieval system
