Cygnus atratus (black swan): 118245545
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Entry
118245545 CDS
T09349
Symbol
PCDH11X
Name
(RefSeq) protocadherin-11 X-linked isoform X1
KO
K16498
protocadherin delta 1
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
118245545 (PCDH11X)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cata01009
]
118245545 (PCDH11X)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cata04515
]
118245545 (PCDH11X)
Protein phosphatases and associated proteins [BR:
cata01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118245545 (PCDH11X)
Cell adhesion molecules [BR:
cata04515
]
Cadherins
Protocadherins
118245545 (PCDH11X)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
K319L-like_PKD
Fibulin_C
FctA
TMEM154
Cadherin_4
Y_Y_Y
Big_9
DUF6249
Motif
Other DBs
NCBI-GeneID:
118245545
NCBI-ProteinID:
XP_035397731
LinkDB
All DBs
Position
13:complement(16602242..16687651)
Genome browser
AA seq
1030 aa
AA seq
DB search
MDLLSGTYLLAVLLACIVFQSGAQEKNYTVREELPENVLIGNLLKDLNLTLDPDVPLSSP
LQFKLVYKTGDVPLVRVEENTGEIFTTANRIDREKLCSGIFSENRCFYEVEVAVLPDEVF
RLVKIRFLIEDINDNAPLFPSTVINISIPENTAINSRYSVPSAIDPDIGVNGIQHYELLK
PKTAPKRTFGSITNDQGQNVFGLDIIETPEGDKWPQLIVQQILDREQKDTYVMKIKVEDG
GSPPRSSTAILQVTVTDVNDNRPVFKENDIEVSIPENAPVGTSVSQLHATDADLGSNAQI
HFYFSNQISSLAKRLFAIDNATGLITIREPLDREESPVHKLTVLASDGSSTPSRATVTVN
VTDINDNVPSIDTRYIINPVNGTVLLSEKAPLNTKIALITVMDKDADLNGKVTCFTDHDV
PFRLKPVFDNQFLLETATFLDYEATREYAIKIVASDSGKPPLNQSAMLLIKIKDENDNAP
VFTQPIIGLSIPENNAPGTQLTKISATDADSGRNAEISYILGSDAPPIFNLDRRTGILTA
VRKLDREKQDRYSFTVLAKDNGMPPLQTNATVTVSVLDQNDNSPAFTHNEYNFYVPENLP
MYGTVGLITVTDADAGENAAVTLSILNGRDNFIIDPLTGVIRPNITFDREQQGSYTFQVK
AVDGGRQQRSSTAKVTINVVDVNDNRPVFVIPSSNYSYELVPTSSSPGSVVTKVFAVDND
TGMNAELRYSIIGGNSRGLFTIDQLTGNITLKEKVITSDHGLHRLVIKVNDLGQPESLYT
IALVHLFVNETVTNSSYVQELVRRNMETPVGQNIGDGEITPQTNDYVKIIIAIIAGTMTV
ILVIFVTALVRCRQTPRHKVVQKNKQSGEWVSPNQENRQIKKKKKKKKRSPKSLLLNFVT
IEESKPDDPGHEHINGTLDIPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPT
FQIKPETPVPPKKHHVIQELPLDNTFVVGCDSLSKCSSSSSDPYSVSECSCQGGFKTPGP
IHTRQAREAI
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggacttgctgtctggaacctacctcttggcagtcttattagcctgtattgtatttcaa
tctggcgcacaggagaagaattatacagtgcgggaagaactgcctgaaaatgtcctcatt
ggcaacttgctcaaggatcttaacttaacgctggacccagatgtccccctttcctcaccg
ttacagttcaagcttgtgtataagactggggatgtaccgttagtacgggtggaggagaac
actggtgagatattcacaactgccaaccgcatagaccgagagaagctgtgctctggcatc
tttagtgagaatcgctgcttctatgaggtggaagttgctgttttgcctgatgaagttttc
agactggtcaagatcagatttctaatagaggatataaatgacaatgccccactctttcca
tcaacagttattaacatctctatacctgaaaacacagcaattaattctcgctattctgtt
ccatctgccattgatcccgacattggtgtgaatggtattcaacattatgaacttcttaag
cccaaaacagctccgaaaaggacatttggatccattacaaatgaccagggtcaaaatgtg
tttggtcttgatataattgagacacctgagggagataagtggcctcaactgattgtccag
cagatcctggatagggagcagaaggatacctatgtgatgaaaattaaagttgaagatggt
ggaagccctccaagatctagcaccgccatcctgcaagtcacagtgactgatgtgaatgat
aatcgcccagtcttcaaagaaaatgacattgaagttagtattccagaaaatgctccagta
ggcacctctgtttctcagctccatgccactgatgcagacctgggctcaaatgcacaaatc
cacttctatttcagcaatcagatctccagtttggccaaaaggctgtttgccattgataat
gccactggtcttatcaccataagagaaccgctagacagagaggaatctcctgtacacaaa
ttaactgttttggcaagtgatggcagttcaactccatcaagagcaacagtgactgttaat
gtcacagatattaatgacaatgtcccatcaatagacacaagatacatcatcaatccagtg
aatgggacggtgcttttgtctgagaaagctccacttaatacaaaaattgcattgataaca
gtaatggacaaggatgctgatctgaatggaaaggttacttgttttacagatcatgatgtc
ccttttaggctgaagccagtgtttgataatcagtttctcctggaaacagccacatttcta
gattatgaagcaacacgggaatatgctattaaaatagtggcttcagattcagggaaacct
cccttaaaccagtctgcaatgctcctgatcaaaattaaagatgaaaatgacaatgcccca
gtttttacacagcctattataggtctttccatccctgaaaacaatgctccaggtactcag
ctaaccaagataagtgctacagatgccgacagtgggcgcaatgctgagatcagctatatt
ctgggttctgatgcaccccccattttcaaccttgaccgccgtacaggcattctgacagca
gtcaggaagttggacagagaaaagcaagacagatactccttcactgtactggctaaggat
aatgggatgccacccttgcagaccaatgctactgtgacagtgtcagtcctggaccagaat
gataacagccctgctttcacacataatgaatataatttctatgtgccagaaaacttaccc
atgtatggcacagtagggcttatcacagtaacagatgctgacgctggagaaaatgctgcg
gtcactctctctatattaaatggtagagataatttcattatagatccccttactggtgta
ataaggcctaacattacctttgatagggaacagcaggggtcatacacttttcaggtgaaa
gctgtggatggaggaagacagcagcgttcctcaactgccaaagtgaccatcaatgttgtt
gatgtaaatgacaacaggcctgtttttgttattccttcatctaattattcatatgagttg
gttccaacatcatccagtccagggtctgtagttactaaagtctttgcagttgacaatgac
acaggcatgaatgcagagctccgttacagcatcataggtgggaactcaaggggcttgttt
acaattgaccaattaacaggcaatattactttgaaagagaaggtaattacatcagatcat
ggcttgcacagactggtgataaaagtcaatgacctaggacagccggagtctctttatact
atagctcttgtgcatttgtttgtgaatgagacagtcaccaatagttcctatgtacaagag
ctagtgcgcaggaatatggaaactccagttggccagaacattggggatggtgagataacc
ccacaaaccaatgattatgtcaagatcataatagcgattattgcaggaacaatgacagtt
attctggtaatttttgttactgctttagtacggtgccgccagacgcccaggcacaaagtt
gtccaaaaaaacaagcagagtggtgaatgggtttccccaaaccaagagaataggcagatc
aagaagaagaagaagaagaagaagcgctctccaaaaagtctcctcctcaactttgtgact
attgaagaatctaagcctgatgatcctggccatgagcacataaatggcactttagacatt
cctgtagagctagaagaacagactatgggaaaatataactgggccaccacaccaaccaca
tttaaacctgatagcccagatttggcaaagcactacaagtctgcttctccacagcctacc
tttcaaattaaacctgagactcctgtaccccccaagaagcaccatgtcattcaggaactg
cctctagataacacctttgtggtgggctgtgactcactctccaagtgctcatcaagcagc
tcggacccttacagtgtttccgaatgcagctgtcaaggaggcttcaagaccccaggcccc
attcacaccagacaggcaagagaggccatttga
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