Cygnus atratus (black swan): 118245558
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Entry
118245558 CDS
T09349
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118245558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cata03019
]
118245558
Messenger RNA biogenesis [BR:
cata03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
118245558
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
118245558
NCBI-ProteinID:
XP_035397751
LinkDB
All DBs
Position
13:complement(4600485..4626741)
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AA seq
562 aa
AA seq
DB search
MATELEPPAAGAVQGAAPLEAEEDEEHWLYGDDTTGKQEDGPISGHAESSHPLQDAPQEN
RPVSNEDREMSQHALPSGEDDEEDSDSDSDDDDVKVTIGNIKTGAPSYMGTPMNLNLKTG
RGYGASASAKLQPKGIDLDAAGNINGLPVIEVDLDSFEDKPWRKPGADLSDYFNYGFNEE
TWKAYCEKQRRLQLGLDPAPPISTENKITVQQGRTGNAEKEVENNIIKTEFKTDFLALVG
GRMKAGPPPNRKLGGTIDVIGGQAGTIRRVEGRRRDKHASEENPIQVLGDHGSKPQPPQQ
PQQPSQPQQPPQQQPFAPPAGPPPPPLAGPPPPHFLHPPPPVTSVPPPLHPPGLPPPGPI
PGLFPPPLAPPPALLIPTLDGQPASYNNRQPPPFGYNSADSGFISYPPISTSHTPWVTTV
DKGTSSSSSSHWEYSGSRRERERERERERERERDRDRTPTTSEYNNDDERYRYYSRERSY
DFERDYRRSRDRSREREDRHRERRHRDKEESSKHKSSRRKQHESEEGESHRRHKHKKNKR
SKEEKEASEDGAQEGEEQDAKE
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgagctggagccgccggcggccggcgcggtgcagggcgcggcgccgctggag
gcggaggaggacgaggagcactggctgtacggagacgacaccactggcaagcaagaagat
ggaccaatttctggacacgcagaatcttctcatcctttgcaagatgctcctcaggagaac
cggcctgtcagcaatgaagaccgagagatgtcacaacatgcccttccaagtggtgaagat
gatgaagaagacagtgatagcgatagcgatgatgatgacgtgaaagttactattggcaat
attaaaacgggagcaccatcgtacatgggaactcctatgaatctaaacttaaaaacgggt
agaggctatggagcatcagcttcagccaagttgcagcccaaaggtattgatttagatgcc
gcagggaatataaatggattgcctgttatagaagtggatttagattcatttgaagacaaa
ccatggaggaaaccaggtgctgatctctctgattactttaattacggattcaatgaagaa
acatggaaagcttattgtgagaagcagcgacggcttcagcttgggctggatcctgctcct
cccatcagcactgaaaataagatcacggtccagcaaggaagaacaggaaatgctgaaaaa
gaagtggaaaacaatatcatcaaaacagaattcaaaacagacttcttggctctggtggga
ggacgcatgaaagctgggcctcctcctaataggaagctgggtgggacaattgatgtgatt
ggtggccaggcaggcacaattaggagagtagaaggaagacgacgtgataagcatgcctct
gaggaaaacccaattcaggttctaggagaccacggaagtaagccacagcccccacagcag
ccccagcaaccatcgcagccccagcagccccctcagcaacagccatttgcaccaccagca
ggcccaccaccacccccactcgccgggccacctccaccacacttcctccaccctcctcca
ccagttacttctgttccacctccactgcatcctccaggtctgccaccacccggtcctatt
ccagggctgttcccgcctcctctggcgccaccaccagctctcctcattccgacgctggat
ggccagccagccagctacaataacaggcagcctcctccatttggctacaactctgcagat
tcaggtttcatcagctacccgcccatctccacgtcccacacgccctgggtgacgacggtg
gacaaaggcacaagcagctccagcagcagccactgggagtactcaggctcgaggcgcgag
agagagagggaacgcgagcgggagagggaacgggagagagacagagaccgcacgccgacc
actagcgaatacaacaatgatgacgaacgataccgctactacagccgagagcgcagctat
gacttcgagcgcgactaccgccggagtagagatcgcagccgggagcgggaggatcggcac
cgggagcgcaggcacagggacaaagaggagagcagcaagcataagtcttcaaggcgcaag
caacatgagagcgaggagggggagagtcaccggcgtcacaagcacaaaaagaacaagcgt
agcaaggaggagaaggaggccagcgaagacggtgcccaggagggagaggagcaggatgcc
aaggagtaa
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