Cygnus atratus (black swan): 118245942
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Entry
118245942 CDS
T09349
Symbol
PAN3
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118245942 (PAN3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cata03019
]
118245942 (PAN3)
Messenger RNA biogenesis [BR:
cata03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118245942 (PAN3)
mRNA degradation factors
3'-5' decay
Pan complex
118245942 (PAN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf_CCCH_4
zf-CCCH_4
Pkinase
Torus
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
118245942
NCBI-ProteinID:
XP_035398467
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All DBs
Position
1:complement(187036814..187117285)
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AA seq
947 aa
AA seq
DB search
MNSSGLPCSSPSPVVGPVAAGGAGTGGVSSSASSGAVKLKFCRYYAKDKTCFYGEECQFL
HEEPGAAAAPLGGLPLGIPPAATAGPGYSPHGASPGPAAAAAVGPKKAELGAGGGGGGGG
GGSGGGGGLDGPRLASITVGVGLQEGFECTENSDLGDQLRKSSLCKEPPRSKFRLLREKW
TNVPGIDGGGLADASLTDSYFSTSFIGVNGFGSPAETKYPMMQRMTNSSSSPSLLNDSAK
QYAGHDPLTSPNSSLFNDFAALTVSQRRKLAKPAFPSFITDLEDRYNTVLPRKYRLGMLD
ERIVPVGSKARKSKNPIGCLADRCKTGEPINMVWWNRVTENNLQTPNPTASEFIPKGGST
SRLSNVSQSSMSAFSQALFSHPSMGSPATAGLAPGMSLSAGSSPLHSPKITPHTSPAPRR
RSHTPNPANYMVPTSASASVANAVSQPPSTGQVIQKETVGGTTYFYTDTTPAPLTGMVFP
NYHIYHPAAPHVAYMQPKANAPSFFMADELRQELINRHLITMAQIDQADIPAVPAEVDSY
HSLFPLEPLPPPNRIQKTSNFGYITSCYKAVNSKDDLPYCLRRIHGFRLVNTKCMVLVDM
WKKIQHSNIVTLREVFTTKAFGEHSLVFAYDFHAGGETMMSRHFNDPSADAYFTKRKWGQ
HDGPLPRQHAGLLPESLIWAYIVQLSSALRTIHTAGLACRVMDPTKILVTGKTRLRVNCV
GIFDVLTFDNSQNNPLALMAQFQQADLISLGKVVLALACNSLSGIQRENLQKAMELVTIN
YSSDLKNLILYLLTDQNRLRSVNDIMPMIGARFYTQLDAAQMRNDVIEEDLAKEVQNGRL
FRLLAKLGTINERPEFQKDPTWSETGDRYLLKLFRDHLFHQVTEAGTPWIDLSHIISCLN
KLDAGVPEKISLISRDEKSVLVVTYSDLKRCFENTFQELIAAANGQL
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcagcggcctgccctgctcctcgccctcgccggtggtggggccggtggcggcc
ggcggggcggggaccggcggcgttagcagcagcgccagcagcggggccgtgaagctcaag
ttctgccgctactacgccaaggacaagacctgcttctacggcgaggagtgccagttcctg
catgaggagcccggcgccgccgccgctcccctcggcgggctccccctcggcatccccccg
gcggccaccgccgggcccggttactcgcctcacggggccagcccgggcccggcggcggcg
gcggcggtggggcctaagaaagccgagctgggggcgggaggcggcggcggcggaggagga
ggaggaagcggcggcggcggggggctggacggcccgcggctggcgagtatcactgtagga
gtgggcctgcaggaaggatttgaatgcacagaaaatagtgaccttggggaccagctcaga
aagagctccctgtgtaaggaaccacctagaagcaaatttagactgctgcgggaaaaatgg
acgaatgttcctggaatagatggcggcgggttagctgatgctagtctcacagattcctac
tttagcaccagcttcattggcgttaacggatttggaagtcccgctgaaaccaagtatccc
atgatgcagaggatgacaaatagcagcagctcccctagccttctcaatgacagtgccaag
cagtacgcaggccatgatccactaacttcaccaaattcatccttatttaatgactttgct
gccctcaccgtgtctcaaaggagaaagctggcaaaaccagcatttccttcgtttatcact
gacttggaggacagatataatacagtcttgcccaggaagtatcgactggggatgctggat
gagaggatagttccggtgggatcaaaagcaagaaaatcaaagaaccctatcggctgtctg
gctgacaggtgtaaaacaggagaacccatcaatatggtttggtggaacagagtcacagaa
aacaatttacagacaccaaaccctactgcaagtgagtttattcctaaaggaggatcaacc
tccaggctgagtaatgtatcccagtcaagtatgtctgccttctctcaagccttgttctct
cacccctccatgggaagtcctgctactgctgggctagcaccaggaatgtcactgtcagca
ggatcttctcctcttcattcccccaaaataactcctcatacatctcctgctcctcgacga
agaagtcatactcctaacccagcaaactatatggtgcctactagtgcctctgcttctgtt
gctaatgctgtctcccagcctccatctactggccaggtgatccagaaggaaacagtgggt
ggaacgacatacttctatactgatacaactccagcacctctcacaggaatggtatttcca
aattatcacatttaccatccagctgcacctcatgttgcttatatgcagccaaaagcaaat
gcaccttccttcttcatggcggatgagctcagacaggaactgatcaacagacacttaata
actatggcccagattgatcaggctgatattcctgcagttccagcggaagtggacagctac
cacagcctctttcctttagaaccactgccaccacccaatcggatacagaaaacaagtaac
tttgggtacattacgtcatgctataaagctgtaaatagtaaagatgatctgccatattgc
cttcggaggatacatggttttcgtcttgttaacacaaaatgcatggtattggttgacatg
tggaaaaaaattcagcactcaaatatagtaaccttgcgtgaagtgtttaccactaaagca
tttggagaacattctcttgtgtttgcatatgattttcatgctggaggagagactatgatg
agcagacacttcaatgaccctagtgctgatgcctatttcacaaaaagaaaatggggtcag
catgatggacctctaccacggcagcatgcgggattgcttccggagtcgttgatatgggca
tatattgtgcagctcagctctgccttaaggaccattcatacagcaggattagcatgccga
gttatggatccaacaaagattctagtaactggcaaaacaaggttacgagttaattgtgtt
ggaatctttgatgttttaacatttgacaacagtcaaaataatccactggcattaatggct
cagtttcagcaagcagatctgatctccctggggaaagttgtgttggctttggcgtgcaat
tctttatcaggaattcagagagagaatttgcagaaagcaatggaactggtgacaatcaac
tattcctctgatctgaagaatctgattttgtatttgctgactgaccaaaacaggcttcgc
agtgtaaatgatatcatgcctatgattggtgcgcgattctatactcagttggatgctgct
caaatgagaaatgatgttatagaggaagaccttgcaaaggaggtgcaaaatggaaggttg
tttaggcttctagcaaaattgggaacaatcaatgagaggccagagtttcagaaagaccca
acatggtcagaaactggagacaggtatttactaaagctctttcgagatcaccttttccat
caggtgacagaagcgggtactccttggattgacctcagtcacattatctcatgtcttaac
aagttagatgctggtgtgccagaaaaaataagcctcatttccagagatgagaagagtgta
cttgtggtaacttacagcgatttaaaacgctgctttgaaaatacttttcaagaactgatt
gcagccgcaaatggtcagttgtag
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