Cygnus atratus (black swan): 118246008
Help
Entry
118246008 CDS
T09349
Symbol
IFT88
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X1
KO
K16474
intraflagellar transport protein 88
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cata03037
]
118246008 (IFT88)
Cilium and associated proteins [BR:
cata03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
118246008 (IFT88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_19
TPR_8
TPR_7
TPR_14
TPR_6
TPR_16
ANAPC3
TPR_11
ARM_TT21_4th
TPR_17
TPR_10
TPR_9
TPR_CcmH_CycH
ARM_TT21_5th
TPR_15
HEAT_Nup120
Consortin_N
ARM_TT21_C
TPR_21
DUF6584
HAT_PRP39_C
DUF2989
FumaraseC_C
Coatomer_E
ARM_TT21_2nd
GnHR_trans
Motif
Other DBs
NCBI-GeneID:
118246008
NCBI-ProteinID:
XP_035398618
LinkDB
All DBs
Position
1:complement(190123108..190336622)
Genome browser
AA seq
818 aa
AA seq
DB search
MMQNVHLAPEEDEDDLYSGYNDYNPTFDTEDLENDIGFQQAARTSHGRRPPVTAKIPGTS
ASRPLGTAFGSKATLTSSMGRPMTGAIQDGVSRPMTAVHAAGYTKAAMRGSLFDPLGQAR
GPAPPLEMKNPDSSEEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKEAGRKERVLVR
QREQISTPENINLDLTYSVLFNLASQYAANEMYAEALNTYQVIVKNKMFSNGGRLKVNMG
NIYLKQRNYSKAIKFYRMALDQIPSVHKEMRINIMQNIGVAFIKTGQYIDAISSFEHIMS
MSPNLKAGFNLILCYFAIGDSEQMKKAFQKLIAVPLEVDYDDKYISTNDDPHTNLLIEAI
KNDSLRQIERERKSMAEEYIMTAAKLIAPVIETSFAVGYDWCVEVVKASHYVELANDLEI
NKATTYLRQQDFNQALETLKMFEKKDSRVKSAAATNLSFLYYLENELAQASNYADLAVNS
DRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNLGLTYKKLNRIDEALD
CFLKLHAILRNSAQVLHQIANIYEMMEDPNQAIEWLMQLISVVPTDPHVLSKLGKLYDNE
GDKSQAFHYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIEYFERAALILPTQVKWQLM
VASCYRRSGNYQKALEKYKVIHRKFPENVECLRFLVRLCTDMGLKEVQEYMTKLKKVEKL
KEIREQRIKSGRDGSARSRKEGNAGGDTGGTKGEKLSAKLKALPGTSEPYESSSSKEIDA
SYIDPLGPQAERPKTAARKRTEEDDFADEELGEDLLPE
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaaaacgtgcacctggctccagaggaagatgaagatgatctttattctggctac
aatgattataatcccacttttgacacagaggatttagaaaatgatataggttttcaacag
gcagcaagaacaagtcatgggagaagaccccctgtgacagccaaaattcctggtacatca
gcttcaagacctttaggtactgcatttgggtcaaaggcaactttaacttcatctatggga
agaccaatgacaggagctatacaggatggggtttctcgacccatgacagcagtgcatgct
gcaggttacactaaggcagccatgagaggttctttatttgatcctcttggccaagcaaga
ggtcccgctccacctttggaaatgaaaaatccagacagttcagaagagaagattaggcag
ttagaaaaaaaagtgaacgaactggttgaagaaagttgcattgccaacagctgtggagac
ttgaaattggctctggaaaaagcaaaagaagctggaagaaaggaaagagtattggtgaga
caacgtgaacaaatttctactccagaaaacatcaacttagatctcacgtactcagttctt
ttcaatctggctagtcagtatgctgctaatgaaatgtatgctgaagcactgaatacttat
caagttatagtgaagaataagatgttcagcaatggaggtagactgaaggtcaatatggga
aacatatatttaaaacaacgaaactattccaaagctatcaaattctaccgtatggctcta
gaccagattcctagtgtccacaaagagatgaggattaatataatgcaaaatattggagtt
gcatttattaaaactggccaatacattgatgccatttcttcctttgaacatataatgagc
atgtccccaaatctgaaggcaggcttcaacttgatcctatgttattttgctattggagac
agtgaacaaatgaaaaaagcattccaaaaactgattgcagttcccttggaagtggattat
gatgacaaatacatttcaacaaatgatgatccacataccaatctactgattgaagccatt
aaaaatgacagtttaagacaaatagaacgtgagaggaaatccatggcagaggaatacatc
atgacagctgctaaactgattgcaccagtaattgaaacatcttttgctgttggctatgac
tggtgtgttgaagtagtgaaagcttcccactatgtagagttagccaatgacctggaaata
aataaagccactacttatttgaggcaacaggattttaaccaggcactggagactttaaaa
atgtttgaaaaaaaggatagcagagtaaagagcgcagctgcaacaaacctttcattcctt
tattatttggagaatgaattggcacaagcatctaactatgcagatttagctgtaaattct
gataggtacaatccagcagctctaactaacaaaggaaatactgtttttgcaaatggagac
tatgaaaaagcagctgagttttataaggaagctctcaggaatgattcctcttgcactgaa
gcactttataatcttggtttaacatacaagaagttaaacagaatagacgaagccttggat
tgttttctgaaactccatgcaatccttcgaaatagtgcccaagtccttcaccaaatagca
aacatatatgaaatgatggaagatcccaatcaagccatagagtggcttatgcagctgatc
agtgtagtaccaactgaccctcatgtcctttcaaagctagggaaattatatgacaatgaa
ggtgataaatctcaagcttttcattattactacgagtcgtaccggtatttcccttcaaac
attgaggtcattgaatggcttggagcctattacattgacacccagttttgtgaaaaagcc
attgagtactttgaaagagcagcacttatcctacctacacaagtgaagtggcagctgatg
gttgccagttgctatcgaagaagtggtaattaccagaaagctctagagaaatacaaagtc
attcacagaaaattcccagagaatgtcgaatgcctccgatttttagttcgtctctgcaca
gatatgggactgaaagaagtccaagaatatatgacaaagctcaaaaaagtggaaaaatta
aaagaaataagagagcagcgcattaagtctggcagagatggcagtgcacgtagccgcaaa
gaaggaaatgctggtggcgatactggtggtaccaaaggggaaaaactgagtgccaaacta
aaagctttgcctggaacaagtgaaccttatgaaagtagcagcagtaaagaaatagatgcc
tcctacatagatccacttggcccacaagcagaaagaccgaaaactgcagcaagaaagaga
actgaggaagatgactttgctgatgaagaactaggagaggatttgcttccagaataa
DBGET
integrated database retrieval system
