Cygnus atratus (black swan): 118246478
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Entry
118246478 CDS
T09349
Name
(RefSeq) LOW QUALITY PROTEIN: neural-cadherin-like
KO
K27892
neural-cadherin
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cata04515
]
118246478
Cell adhesion molecules [BR:
cata04515
]
Cadherins
Cadherin related
118246478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Laminin_G_2
Laminin_G_1
Ig_Shg
Cadherin_pro
CADH_Y-type_LIR
Cadherin_CELSR2_9th
EGF
hEGF
Laminin_G_3
cEGF
Big_9
Motif
Other DBs
NCBI-GeneID:
118246478
NCBI-ProteinID:
XP_035399507
LinkDB
All DBs
Position
12:complement(21697396..21760433)
Genome browser
AA seq
3111 aa
AA seq
DB search
MAEGGRPALRLRHRCQRAAERGASLRGTGESRGASPELPGAGKSGSAGGCEPSLGSFSVR
GLLSVAPPHVEMVLCPDIEGSALDGAAHGGKKIPAGQRDGPSAGCRGQRCPSSCCSSGGG
VRRARGKLQLLFREWLTQLIDAQGARIRPNQARMPCGSTSMRGAYLMPDSGRPNKLQYGW
RRDRLGSGELWLADSSLPYPPRGRARRRAPHGDGPSPRPVPRRCLPAGPAPGARRSDARP
PPPPSLLPQTPRGCSQRLSARPVAGMARRAAACLLLLCCALPLGSARAAPQRTPSFGGRV
AENRPAGTRVQGLSVPLTRLGAPSWCAQVRGRRWRLQLLGEGHAHFQAALHARTARVWLR
TRRPLDREARPLYALRLALRCARRPAAPAAPLAALTVRVLDANDNAPRFVGARPARLRLD
ETLPLGSAVWRARAEDADAGANAELRYFALPPSEHFFVVPRSGSVLLVRSLLHLRAPIPL
RLYARDRGRPALLSAPLELEVLPQAKRLPPPPGPADGPQRRRRAPSLSPPVPEDARPGRP
LGRFEPAAPAVEESALPVETESGAARPAARLHGPGAAGGERLGRGPEQQGKDQYLLHLAL
TATDANDNVPEWAMEPFPFLAVVSPQAAKGTQVYKLLAVDADEGIHGTVEYFLLEGGEDR
FEVERDTGWIKTTGLPLVRNKEYLLTVLAADKLGNKGSPASVSIIAGFRPPQFSNMSYFV
HVPESMAQRKSFLRVTAISYQNKSLSYSLLTNPSGLFSIGQATGDISLTRNVDYESDQHQ
YLLLVRAEENEEQLSSAAEVSVVITDVNDCAPEFHQSIYSKVSVPETVTRTTALLQVTAT
DCDSKENAEILYYSLSPDFSITSHGTIFPATKLDYERPNHLYEFIIMAVDKGEEPKTGTA
TVRIQISNVNDEAPEFSQTTYRSFVSEDAGPNTLVATVNAVDPDGDGVNYDILSGSQKGN
FVIDPKKGLVRLHSSPFPKLHGTEYILNVTATDDNASGGTCFLTSTAQVIVKIDDVNNNK
PVFQKCQYYREHASVLENHSSGTVVLQVEATDADEGASGIVKYGLMHRDGILPAFSIHPD
TGVLTTIQVFDREKQREYSIILTATDQAAEPLIGICQINVSILDQNDNDPRFENTHYEYF
LREDTRVGTSFLHVAAHDDDYGSNAVITYSIANEEPDYLQINSTTVWMFVNQPISQRSSI
IQEIIATDGGNRSSKVELVVTITSAKKQPPQWERDSYEVVIPENTTRDTSVLTIKATSPL
GNPRVTYNLEEGLVPETNMPVRFYLTPNRDDGSASILVAEPLDYETTKSFLLRVRAQNVA
AVPLAAFTMVYINVTDVNDNVPFFTSSVYEASVAEGADVGTFVIKVSATDLDLGQNGEII
YSLLHDRSRDYTRFHLDSQTGSIYTTSVFDREKKRSYLLEVKSVDGSESARPGKHGRPNS
DMAYVHVFITDVNDNKPVFSQSVYEVNVDEDQDVGSPIITVSAKDEDEGTNAKLRYQITA
GNTGGELNVEAETGTIFVAQPLDYEETKIHEIHSLASDGKWEDYAVIIINVMNKNDESPV
FSINEYYGSIIEELDGLSVFVLQVMANDPDSNVDEGDLRYSLHGHGAADTFTIDENTGSI
YAHRMLDREEKALWRFVVLATDEGGDGLTGFADVIINVWDINDNAPFFTCMPDDCNGSVF
EDSPADTLVMAMSAVDRDDPNVGLNAVLTYRITGNVKNEFGTDMFSINPSTGTIHVVGGV
LDRERTANYFLTVEARDGGGPTGTGTATIWIADVNDHVPRFTKKLWQATIPENSAIDSEV
LQVSAADADAGENAHLTFSIIRGDPDQKLFIENDKEWQCATIRLKKXLDFEKAHERQFNL
TIKVEDLDFSSTAVCLIEVEDSNDHSPVFPFQFIQTKPFFENMPAGTTVTTVRATDKDSG
LNGNIIYSIKSNSDPLRQFAVDKHGHVIVANKLDREVIQKYSLIVQASDQGMPAQTGSVT
VLINLLDVNDNGPEFEAPYLPVVWQNALRPEIVHMNHTSKLLHAFDPDSEENGPPFTFSL
PRDYQNSLDFSLTDNRNNTATITALRSFDREKQKVFHLPIVIADSGIPAMSSTNTLTITI
GDENDNCHESGHKEIYVCSNKGKWSTTALGEVFAPDQDDWDNKTFLFEGKLLKSFRLNQR
TGSLMMVDNAPEGIHSLKVRVSDGVWPDVISTVQIHVKELEDEAIQNSATVRLSDVTAEE
FIQRDKHGKNRYVKFKELLAKMLSVQLSDIIVFSLMNVDGKQADVRFAVLDGSAYYRPEK
LHAEMAAFKNEIQSALQASISQIDVDECRSANCSEGNGCTNYLSVSDIPTVMDTGSVSFA
SVTITVSAVCTCSARDRVHQSCSSYSRSPCLNGGMCIDTLNGYRCLCPASFHGPDCQQTK
HSFHGNGYAWFHPIRPCFESSLSLEFITAVPDGLLLYSGPLSNPEPGSTENFIAIELTSG
IPVLKMSHGSGSVILQFPSHLNVTDKKWHQLEVRTNGQDVRFTLDHCSTAVISEIEGVGK
WLSTEDRTNYEVFGSVPRRARYLNVNHVLQLGGVKESLPYSYSQLLHKHFTGCLRNFILD
TQVYDLQSPAESLNSFPGCTLMDGSCETMGSSSCGVHGRCLGDWGSFACHCLPGYYDYRC
DKVAKEYMFGPGSHIRYQLPISMPARRTRFEAMIRTRQPDSVITSMLSRNKDEHITLQVV
QGFLVVSYNLGDGDYSVRLPSYNIDNGEWHRITLDRNGNEFTLLLYEGGGKKEILKAAGV
YKEIVIDPSSLVLGNTFNLNKSFQGCMKDVRFNNYRIPLDTHTKELVSVLSAQSIKEGCS
SEACRNNPCNQEFICIDLWMMHECSCPPGHMIMENASGRQCVYTACAKRPCNYGTCISQS
PTTFQCHCPDGYTGRNCEITLAIFHKDTGLTFSSMLAICICFLALLVLFSAIFLWARWKS
HKGVNGGVYHVSAPHDDLQDIRESNLNYSEEGGGEQDQDAYNMAELQVSIQTSPAYFLYK
KKEKATKLNSFFSGASPSMQEQTKSSVPTKVSFSRADFGXYLSDVRNADHXTPCDSLQVF
YTEGKGSVASSLSALSSSDLDEGIMCDDIKXWGPKFEKLSELYLHTDAEDL
NT seq
9336 nt
NT seq
+upstream
nt +downstream
nt
atggctgagggcgggcgcccagcgctgcgcctgcgccaccgctgccaacgcgcggccgaa
cgcggggcttcgctgagggggaccggggagtcgcgtggggcctccccggagctgcccggc
gctggcaagagtggtagtgcggggggctgtgagccctcactggggtctttttctgtcagg
gggttgctctccgtcgctcccccacacgtcgaaatggttctttgtcccgatattgaaggc
tccgcgctggacggagcagctcacgggggaaaaaaaattcccgctgggcagagggatggt
ccttcagcaggttgccgtgggcagcgttgcccgagctcctgctgtagcagtggtggtggt
gtgagaagagcacgtgggaaattacagctcctttttcgagagtggctgacacagctgatc
gatgctcagggagcccgaatcaggccaaaccaggccaggatgccctgcggctccacttcc
atgaggggtgcttatcttatgccagattcaggccgtccaaataagcttcaatacggatgg
aggcgggacaggctgggttcgggggagctgtggctagcggacagctccctgccgtacccc
ccgcggggccgtgctcgcaggagggcgccgcacggtgacggccccagtccccgccccgtc
ccgcggcgctgcctcccggccggcccggccccgggggcgcggcgatcggacgcgaggccg
cccccccccccgtccctcctccctcagaccccgcgcggctgctcgcagcgcctcagcgcc
cgcccggtcgccggcatggcccggcgcgcggccgcctgcctgctgctgctgtgctgcgct
ctgccgctgggctctgcccgcgccgccccgcagaggacgccgtcgttcggcgggcgcgtg
gcggagaaccgcccggcgggcacgcgcgtgcaggggctcagcgtccccctgacgcgcctg
ggcgccccgtcgtggtgtgcccaggtgcggggccgccgctggcgcctgcagctcctgggc
gagggccacgcgcacttccaggcggcgctgcacgcccgcaccgcccgcgtctggctgcgc
acccgccgcccgctggaccgcgaggcgcgcccgctctacgccctccgcctggccttgcgc
tgcgcccgccgccccgccgcgccggccgcgccgctggccgccctcaccgtccgcgtgctg
gacgccaacgacaacgccccgcgcttcgtcggcgcccgccccgcgcggctccgcctggac
gagacgctgccgctcggctccgccgtgtggcgggcgcgcgccgaggacgcagacgcgggt
gccaacgccgagctgcgctacttcgccctcccgcccagcgagcacttcttcgtggtgccg
cgtagcgggagcgtgctgctcgtccgctccctgctccacctgcgcgcccccatcccgctg
cgcctctacgcgcgggaccgcggccgcccggcgctactcagcgccccgctcgagctcgag
gtgctgccgcaggccaagcgtctgcccccgccgcccggccccgccgacggccctcagcgc
cgtcgccgggccccttcgctgtcaccgccggtgcccgaggacgcccgccccggccgcccc
ctgggccgcttcgagccggcggccccggccgtcgaggagtcagcgctgcctgtggagacg
gagagcggcgcggcgcggccggctgcccgcctgcacggcccaggggcggccggcggagag
cgcctggggcgcggcccggagcagcaaggaaaagatcagtacttgttgcacttagcactt
actgcgacagatgcaaacgacaatgtacctgaatgggccatggagcccttcccgttcttg
gctgtggtttctcctcaagctgccaaaggtactcaagtatacaagctgcttgcagtggat
gcagatgaagggatccatggaactgtagaatattttctcttggaaggtggagaagacaga
tttgaagtcgagagggacacaggctggattaaaacgacaggtttgccattggtgaggaac
aaggagtatttactgactgtactggcagcagataaacttggaaacaaagggtctccagcc
tctgtttctataattgctggatttcgaccaccgcagttcagcaacatgtcatactttgtt
catgttcctgaaagtatggcacaaagaaaatcctttcttcgagtcactgctatatcatat
caaaacaaatccctgagctacagtttgctaactaatccgagtggtctgttcagcattggt
caggcaacaggggatatcagcttaactcggaatgtggattatgagagtgaccaacaccag
tatcttctgttggtcagagcagaggaaaacgaggaacagctcagtagcgcagctgaggtt
tcagttgtaatcacagatgtgaatgattgtgccccagaatttcatcagtcaatctacagc
aaagttagtgttcctgaaacagttactaggacaactgcacttctacaagtgacagccact
gactgtgattcaaaagagaatgccgaaatattatattactctttgagtccagactttagt
attacttctcatggtactatatttccagcaacaaaattggactatgagcgacctaaccat
ctgtatgagttcataattatggctgtggataaaggagaggagccgaagactgggacagca
actgttaggattcagatttcaaatgtaaatgatgaagcacctgagttttcccagacaacc
tacaggagttttgtttctgaagatgcaggcccaaatacactggttgctacagttaatgct
gtagaccctgatggagatggtgtgaactatgatattctatctgggagtcaaaaaggaaat
tttgttattgacccaaagaaagggctagttagacttcattcaagtccatttccaaagttg
catgggacagagtacatacttaatgtcacagctactgatgataatgcctccggagggacc
tgttttcttacaagtactgctcaggttattgtgaaaatcgatgatgtcaacaacaacaaa
cctgtctttcagaagtgtcagtattatcgggaacatgcttccgtattggaaaaccactct
tcagggacagttgtactgcaagttgaagccactgatgctgatgaaggagccagtggtata
gtgaaatatggcttgatgcacagagatggtatcctaccagcatttagtattcatcctgac
acaggagttctgacaactattcaggtatttgatcgagaaaaacagagggaatattctatc
attctgacagcaacagaccaggcagcagaaccactcattggaatatgtcagataaatgtt
agcattctggaccaaaatgacaatgatcccagatttgaaaacacccactatgaatatttc
ctaagagaagacacaagagttgggaccagctttcttcatgttgcagcccatgatgatgac
tacggctcaaatgctgtcattacatactccatagcgaatgaagaaccagattatttacaa
attaactctactacagtctggatgtttgtcaaccaacccatatctcagagatcatctata
attcaagagattattgctacagatggaggtaataggagcagtaaagttgaacttgtggta
actattaccagtgcaaaaaaacagcctccacagtgggaaagggacagctatgaagttgtt
attccagagaatactacacgggatacgtcagttttgacaatcaaagcaacttctcccctt
ggcaatccccgtgtgacttacaacctagaagagggacttgttccggaaaccaacatgcca
gttcgtttctacttgactccaaacagagatgatggttctgcttcaatcctggtagctgag
ccactggattatgaaactacaaagagctttctgctgagagttcgagcacagaatgttgct
gcagttcccttggcagcattcactatggtctatattaatgtaacagatgtcaatgacaat
gtcccattcttcacttcatctgtttatgaagcctcagtggcagagggagctgatgttggg
acatttgtcattaaggtctctgccaccgaccttgaccttggtcagaatggtgagataatt
tattctctgttacatgaccgcagcagagactacacacgttttcacttggactcgcagaca
ggttcaatatacactacctcagtgtttgatagagagaagaagaggtcctatctcttagaa
gtcaagtcagtagatggctctgaatcagctcgacctggaaaacatgggaggccaaactct
gacatggcctacgtgcacgtttttatcaccgatgtgaatgataacaagcctgtcttctct
cagagtgtctatgaggtaaacgtggatgaagatcaggatgtaggctcacctatcattaca
gtcagtgctaaggatgaagatgaaggaacaaatgctaagttacgttatcagatcactgct
ggaaacacaggaggagagcttaatgtagaagcagaaacaggaactatttttgttgcccag
ccattggattatgaagaaacaaaaatacatgagatacactcgttggcttctgatgggaaa
tgggaagattatgcagttatcatcatcaatgtcatgaataaaaatgatgagtctccagtt
ttctctatcaatgaatactatggaagtataattgaggaactggatgggttatcagtcttc
gtacttcaggttatggcaaatgatcctgatagcaatgtggatgaaggagatttgagatac
tcattgcatgggcatggtgcagctgatactttcacaatagatgagaacactggaagcatt
tatgcacacaggatgctggatcgggaagaaaaagcactgtggagatttgttgtattggct
actgatgaaggtggagatggacttacgggatttgctgatgtgattattaatgtgtgggat
ataaatgacaatgcacctttcttcacgtgcatgcctgatgattgcaatggaagtgtcttt
gaagattctcctgcagatacattagtcatggcaatgagtgcagttgaccgtgatgatcca
aatgtaggtcttaatgctgttctgacttacagaattacagggaatgtaaaaaatgagttt
ggtactgacatgtttagtatcaatcccagtactggtacaatccatgtagtggggggagtg
cttgatagagaaaggactgcaaattattttcttactgttgaagcaagagatgggggaggg
ccaacaggaactggcactgccactatctggattgcagatgtcaatgaccatgtacctaga
ttcacaaaaaagttgtggcaggcaacaattcctgaaaacagtgccatcgactcagaagtt
ctgcaagtgtctgctgcagatgcagatgctggggaaaacgctcacttaacattcagtatc
atcaggggagacccagatcagaagctttttattgagaatgacaaagaatggcaatgtgcc
actatccgactgaaaaaanaattggattttgagaaggcacatgaaaggcagtttaatctt
actattaaagtggaagatcttgatttttctagtactgctgtttgcctgattgaagttgaa
gactctaatgaccacagcccagttttcccttttcaatttattcagacaaaaccttttttt
gaaaatatgcctgcaggtactacagtaaccacagtgagagctacagacaaagattctggt
ttgaatgggaacattatatattctataaagtcaaattcagatcctttgagacagtttgca
gttgacaaacatggtcatgtgattgtggcaaataaactagatcgtgaggtcattcagaaa
tatagtttaattgtgcaagcttcagatcaagggatgcccgcccaaactggaagtgttaca
gttttgattaacttgcttgatgttaatgacaatggaccagagtttgaggcaccatacctg
cctgtcgtttggcaaaatgcattgaggcctgaaatagtgcatatgaaccatacctcaaag
ctgcttcatgcatttgatccagacagtgaggaaaatgggccaccttttacattttcgttg
ccacgagattaccagaattctttggatttttctcttactgacaacagaaataacacggca
accataactgctttgaggtcctttgacagagaaaagcagaaggtgtttcatctgccaata
gttatagcggatagtgggattccagctatgagctctacaaacaccctaactataacaatt
ggtgatgaaaatgacaactgccatgaatctggccacaaggaaatatatgtgtgcagtaac
aaaggaaaatggtcaacaacagcgcttggggaagtgtttgcaccagatcaggatgactgg
gacaataaaacatttctctttgaaggaaaactgctcaaatctttcaggttaaatcagagg
actggttctttgatgatggtggataatgctcctgaaggaatacacagtttaaaagttaga
gtttctgatggagtttggcctgatgtaatatctacagtacaaatccatgtcaaagagctg
gaagatgaagccatacaaaactcagccactgtgcgtctatcagatgtcacagcagaggag
ttcatacagagagataaacatggcaaaaacagatatgtcaagttcaaggaattactagca
aaaatgttatcagttcagcttagtgatatcattgtcttcagtttgatgaacgttgatgga
aaacaggcagatgtacgatttgcagtccttgatggctcagcatattacagacctgagaaa
ctgcatgctgagatggcagcgtttaaaaatgagatccagtcagctttacaagcgagcatt
tcgcagatcgatgtagatgaatgtaggagtgcaaactgtagtgagggcaatggttgtaca
aactacctcagtgtgagcgacatccccacagtgatggatactggaagtgtctcatttgcc
tctgtaacaatcaccgtcagtgcagtctgcacttgctcagctagggaccgagttcatcag
tcttgttcctcctactctcgaagcccttgtctcaatggtgggatgtgtattgacactttg
aatggttacagatgtctatgccctgcttcgtttcatggaccagactgccagcagactaag
cacagtttccatggaaatggttatgcatggtttcatcccatcaggccttgttttgaaagc
tcactttctctagagtttattactgcagttccagatggacttctattatacagtggtcct
ttatcaaatccagaacctgggagtacagaaaacttcattgcaatagaactcaccagtggc
attcctgtgctgaagatgagccatggctcaggttctgtgatactgcagtttccaagtcac
ctgaatgtaacagacaaaaagtggcatcaactggaagtgagaaccaatggtcaggatgtt
cgattcactttggatcattgcagtacggctgttatttcagagatagaaggagtaggcaaa
tggctgtctaccgaagatcgtacaaattatgaagtctttgggtctgttccacgaagggca
agatatttgaatgtgaaccatgttcttcagctgggtggtgtaaaagaatcgttaccatat
tcctactcacaattgctacacaaacactttactggttgtttgcgcaatttcatcttggat
actcaggtatatgaccttcaatctcctgcagaatccctgaatagcttccctggctgcaca
cttatggatgggagctgtgagaccatggggtcgtcttcctgtggtgttcatgggaggtgc
cttggagactggggctcatttgcttgtcattgtttgcctggttactatgactatcgatgt
gataaagttgccaaagaatatatgtttgggccaggaagtcacattcgctatcaacttccc
atcagcatgcctgcccgcaggacacggtttgaagctatgattaggacacggcagcctgac
agtgtcatcacaagcatgttgtctcgaaataaggatgaacatataaccctgcaggttgtt
cagggattcttagtggtctcatataatctaggtgatggagactattctgtgaggcttccc
tcctacaacattgataacggtgaatggcatcgtatcacactggacagaaatggaaatgaa
tttactcttctcctttatgaaggaggtgggaagaaagaaattctgaaagcagcaggagta
tacaaagagattgtgattgaccccagcagtttagtccttggaaacacattcaatctaaac
aagagttttcaaggatgtatgaaagatgtcagatttaataactacaggatcccactggat
actcacacaaaggagctggtgtcagtattaagcgcccaaagcatcaaagaaggctgttct
tcagaggcttgcaggaataacccttgtaaccaggaatttatttgtattgatttgtggatg
atgcatgaatgcagttgccctccaggacacatgatcatggagaatgcctctggtagacag
tgtgtctacactgcatgtgctaaaaggccctgtaactatggtacctgcatctcgcagtca
ccaaccacgttccaatgtcactgccctgatggctatactggacgtaactgtgaaatcaca
ctggcgatctttcacaaggacacaggcctgacctttagttccatgcttgccatctgcatt
tgttttttggcactgttagttctgttcagtgctatattcttgtgggctcgctggaagagt
cacaaaggtgtgaatggaggcgtataccatgtatcggcccctcacgatgatttgcaggac
atcagagaaagtaacctcaactacagtgaagaagggggtggggaacaagaccaagatgca
tacaacatggcagaactgcaggtgtctattcaaaccagcccagcctatttcctctacaag
aagaaagaaaaagcaacaaaactgaacagcttctttagtggtgcgtccccaagcatgcag
gagcagaccaaatcatcagtgcctacgaaagtctctttttctagggcagactttggttag
tacttgtcagatgttagaaatgctgaccacnncactccctgtgactcgctgcaagtgttt
tacaccgaaggaaaaggctcagtcgctagcagtctcagtgctctgagttcctctgacctg
gatgagggtataatgtgtgatgacattaaatagtggggaccaaagtttgagaaactaagc
gaactgtacttgcatacagatgcagaagacctgtag
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integrated database retrieval system
