Cygnus atratus (black swan): 118246770
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Entry
118246770 CDS
T09349
Symbol
PDZRN4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cata04121
]
118246770 (PDZRN4)
Enzymes [BR:
cata01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118246770 (PDZRN4)
Ubiquitin system [BR:
cata04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
118246770 (PDZRN4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
zf-rbx1
PDZ_Tricorn
Prok-RING_4
TRAF3_RING
Sina_ZnF
RING_XB3-XBAT31
IBR_1
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
118246770
NCBI-ProteinID:
XP_035400077
LinkDB
All DBs
Position
1:31127258..31371891
Genome browser
AA seq
1025 aa
AA seq
DB search
MGFDPERFAAPVAAELQCKLCGRVLEEPLATPCGHVFCAGCLLPWAARRGRCPLRCRPLA
PADLRPVLPLRSLVQKLEVKCDYSPRGCRRVLRLRELPAHLAACRYGPPAARPPGPEEGG
PPGTPRPGEGHRRPRALRGGGPEPGPGQEPRREAVSWSRREKALLAQLWALQSEVRLTAL
RYQAKFGQYMSHISSITRDLTGGRRGGAGEPKPLTIMLHRENDTLGFNIIGGRPNQNNQE
ESAEGIYVSKILENGPADKAEGLQIHDKIIEVNGKDLSKATHEEAVEAFRNAKEPIVVQV
LRRAPISKAHGSSQDVRLVDACTQTDITFEHIMALAKLRPSTPPVPDICPFLLSDSCHSL
HPAEHEFYEGNEYLSSLPADADRTEDFEYEEVELCRISSQEKLGLTVCYRTDDEEDTGIY
VSEVDPNSIAARDGRIREGDRILQINGQDVQNREEAVALLSSDECKKIVLLVARPEMQLE
EGWLDDERNEFLEELNLEMLEEQHNEAMQYTANEVEQPKKHEEEDGTTDTATSSSNNHEK
DSGVGPTDESLRNDESSEQENAPEEQNSATLQCKQELGHSQDTLGSVELQCNESFLSGEY
VESDFIGNPEEECERFRQLLELKCKIRNHGEYDLYYSSSTIECNRREQDGVEHELQLLNE
ELRNIELECQNIMQAHRLQKVRDQYGDIWALHDEGFRNYNTSIDVQRGKLDDIMEHPEKS
DKDSSSAYNTAESCRSTPLTVERSPDNSLQRMISITNRKNLRSTIVANQSSSGQSNKETT
SAKTKPTEQNSAAEDTVLASESGKFTDQEKQSSEHIPYLSPYHSSSYRYGNIPAHAKHYQ
SYMQLIQQKSAVEYAQSQLSLVSMCKDSQKCAEPKMEWKVKIRSDGTRYITKRPVRDRIL
KERALKIKEERSGMTTDDDTMSEMKMGRYWSKEERKQHLVRAKEQRRRREFMMRSRLECL
KESPQSGSEGKKEINIIELSHKKMMKKRNKKILDNWMTIQELMTHGAKSPDGTRVHNAFL
SVTTV
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgacccggagcgcttcgcggcgccggtggcggcggagctgcagtgcaagctg
tgcggcagggtgctggaggagccgctggccacgccgtgcggccacgtcttctgcgccggc
tgcctgctgccctgggcggcgcggcgggggcgctgcccgctgcgctgccggccgctggcg
cccgccgacctgcgcccggtgctgccgctccgcagcctggtgcagaagctggaggtcaag
tgcgactacagcccgcggggctgccgccgcgtcctgcggctgcgggagctgcccgcacac
ctcgccgcgtgccgctacgggcccccggctgcgcggccgcccggcccggaggagggcggc
ccccccgggaccccccggccgggcgaggggcaccggcgcccgcgggcgctgcggggaggc
ggcccggagccggggccggggcaggagccgaggagggaggccgtgagctggagcaggagg
gagaaggcgctgctggcgcagctgtgggcgctgcagagcgaggtgcggctcacggcgctg
cgctaccaggcgaagttcggccagtacatgagccacatcagcagcatcacccgcgacctg
acgggcggccggcgcggcggggcaggagaacccaaaccattaacgatcatgctacacaga
gaaaatgatactttgggattcaatattataggaggacgacccaatcagaacaatcaggag
gaatctgctgagggaatttatgtgtcaaaaattttggaaaatggacctgcagacaaagca
gaaggcctgcaaattcatgacaagattatcgaggtcaatgggaaggacctctccaaggcc
actcatgaagaggcagtggaagcttttcgcaatgccaaggagccaattgtagttcaagtt
ttacgacgagctccaattagcaaagctcatggtagctctcaggatgtacggcttgtggat
gcctgcactcagactgacatcacttttgagcacattatggctctggccaaactaaggcct
tccacaccgccagttcctgatatctgcccttttctactttcagacagctgccattctctt
cacccagcggagcatgaattttacgaaggtaatgagtatctttccagcctgcctgctgat
gcagatagaacagaggactttgagtatgaggaggtggagctgtgccgcattagcagccag
gagaagctggggctgactgtctgctacagaactgacgacgaggaagacacagggatctac
gtcagcgaggttgatccaaacagcattgctgccagagacggccggatccgtgaaggagac
cgtattttgcaaattaatggccaagatgtccagaatcgggaagaagcagtagcattgctc
tccagcgatgaatgcaagaaaattgtgttgctggtagcaagaccagagatgcagctggag
gaagggtggctggatgatgaaaggaatgaattcttggaggagttgaacttagaaatgttg
gaagagcagcataatgaagcgatgcagtacacagccaatgaggtggagcagccaaagaaa
catgaggaagaggatggaactacagacactgcaacctcatcatccaacaatcatgaaaag
gacagtggggtgggacctacagatgaaagtttgcgtaatgatgagagctcggagcaagaa
aatgcacctgaggagcagaacagcgctaccctgcagtgcaaacaggagctgggtcacagc
caggatacgttaggaagtgttgagctccagtgcaatgaaagctttttgtcaggggaatac
gttgagtctgatttcatagggaacccagaggaggaatgtgaaaggtttcgacagcttctg
gaactgaagtgcaagattcgaaaccatggggagtacgacctgtattactcgagcagcaca
atagagtgcaacagaagagagcaagacggagtggagcatgagctacaactgctcaatgag
gaactgaggaacattgaactcgaatgtcagaatattatgcaagctcaccgactccaaaag
gtgagggatcagtatggagacatttgggctttacatgatgaagggttcaggaattacaac
accagcatagacgtgcaaagaggcaaactggatgacatcatggagcaccctgagaagtcc
gacaaggacagctccagtgcctacaacacagcagaaagttgcaggagcactcccttgacc
gtggagcgatcccctgacaactctctccagcggatgatcagtatcaccaacaggaaaaac
ctgaggagcacaattgtggctaatcagtcatcctcaggacaaagcaacaaggagacaacc
tcagccaaaaccaaacccactgaacaaaacagtgctgctgaagacactgtgctggcatca
gaaagtggcaaattcacagaccaagaaaagcagagcagcgagcacattccctacctgtcc
ccatatcacagctcttcttacaggtatgggaatatacctgctcatgcaaagcattatcaa
agctacatgcagctgatccagcagaagtcagctgtggagtatgcccaaagccaactcagc
ctggtgagcatgtgcaaagactcgcagaagtgtgcagagcctaagatggaatggaaagtg
aaaataaggagcgatgggacgagatatatcacaaagagaccagttcgagacagaatcctg
aaggaacgtgccttaaaaattaaagaggagcgcagtggaatgacgacagatgatgataca
atgagtgagatgaagatgggtcgctactggagcaaagaagagcggaagcagcatttggtg
cgagctaaggaacagaggaggcgacgggagttcatgatgcgtagcaggctggagtgtctc
aaggaaagtccgcagagtggcagcgagggcaaaaaggaaattaacattattgaactgagt
cacaaaaagatgatgaaaaagagaaacaagaaaatcttggacaactggatgacaatccaa
gaactgatgacacatggtgctaaatctccagacggcacaagagtacacaatgccttttta
tcagttactactgtatga
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integrated database retrieval system
