Cygnus atratus (black swan): 118246820
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Entry
118246820 CDS
T09349
Symbol
CNTN1
Name
(RefSeq) contactin-1
KO
K06759
contactin 1
Organism
cata
Cygnus atratus (black swan)
Pathway
cata04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
118246820 (CNTN1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cata04515
]
118246820 (CNTN1)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
cata00537
]
118246820 (CNTN1)
Cell adhesion molecules [BR:
cata04515
]
Immunoglobulin superfamily
Contactins
118246820 (CNTN1)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
cata00537
]
Others
118246820 (CNTN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
fn3
Ig_2
V-set
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Sp38
Interfer-bind
Tissue_fac
DUF4998
Ig_ILCR1
NDNF
Big_3_4
Motif
Other DBs
NCBI-GeneID:
118246820
NCBI-ProteinID:
XP_035400154
LinkDB
All DBs
Position
1:30828246..31079333
Genome browser
AA seq
1008 aa
AA seq
DB search
MWFFIGHLITFCFIFCESGHLHEEGNKGYGPVFEEQPIDTIYPEESSDGQVSMNCRARAI
PFPTYRWKLNNWDIDLTKDRYSMVGGRLVINNPEKSRDAGKYVCVVSNIFGTVRSSEATL
SFGYLDPFPPEERYEVKVREGIGAVLLCEPPYHYPDDLSYRWLLNEFPVFITLDKRRFVS
QTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPQTDRAKVYPADIKVKFKET
YALLGQNVTLECFALGNPVPELRWSKYLEPMPATAEISMSGAVLKIFNIQYEDEGLYECE
AENYKGKDKHQARVYVQASPEWVEHINDTEKDIGSDLYWPCVATGKPIPTIRWLKNGASF
RKGELRIQSLTFEDAGMYQCIAENTHGIIYANAELKIVASPPTFELNPMKKKILAAKGGR
VIIECKPKAAPKPKFSWSKGTELLVNGSRIRIWDDGSLEIINITKLDEGRYTCFAENNRG
KANSTGVLEMTEATRITLAPLNVDVTVGENATMQCIASHDPTLDLTFIWSLNGFVIDFEK
EHEHYERNVMIKSNGELLIKNVQLRHAGRYTCTAQTIVDNSSASADLVVRGPPGPPGGIR
VEEIRDTAVALTWSRGTDNHSPISKYTIQSKTFLSEEWKDAKTEPSDIEGNMESARVIDL
IPWMEYEFRIIATNTLGIGEPSMPSQRIRTEGAPPNVAPSDVGGGGGSNRELTITWMPLS
REYHYGNNFGYIVAFKPFGEKEWRRVTVTNPEIGRYVHKDESMPPSTQYQVKVKAFNNKG
DGPFSLTAVIYSAQDAPTEVPTDVSVKVLSSSEISVSWHHVSEKSVEGYQIRYWAAHDKE
AAAQRVQVSNQEYSTKLENLKPNTRYHVDVSAFNSAGYGPPSRTIDIITRKAPPSQRPRI
ISSVRSGSRYIITWDHVKAMSNESAVEGYKVLYRPDGQHEGKLFSTGKHTIEVPVPSDGE
YVVEVRAHSEGGDGEVAQIKISGATAGVPTLLLGLVLPTLGVLAYSGF
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgtggttcttcatcggtcatcttattacattctgtttcatcttctgtgagagcggtcat
cttcacgaggaaggaaacaaaggttatggacctgtttttgaggagcaacccattgatacc
atatatccagaagaatcttcagatggacaagtttcaatgaactgcagggctcgagcaatt
ccttttcctacttacaggtggaaactcaacaactgggatatcgatttaacaaaggatcgc
tacagtatggtgggaggcagacttgttatcaataatccagagaaatcaagggatgctgga
aaatatgtctgtgtagtatcgaatatctttggaactgtcagaagcagtgaagcaactctg
agttttggatatctggatccctttccacctgaggaacgctatgaggttaaagtgcgagaa
ggtattggagcagtgcttctttgtgagcctccttaccactacccagatgacctcagttat
cgctggcttctaaatgagttcccagtattcatcactttggacaaacgacgatttgtgtcc
cagacaaatggcaatctctacattgcaaatgtagaagcatcagataagggcaattattca
tgttttgtgtccagcccttcgataacaaagagtgtattcagtaaatttattccacttatt
ccacagaccgatcgtgcaaaagtgtatcctgctgatatcaaggtgaagttcaaggagacg
tatgctctcctggggcaaaatgtgacactggagtgttttgctcttgggaatccggttcct
gaactcagatggagtaaataccttgaacctatgccagccactgctgagataagcatgtct
ggtgcagttcttaagatctttaatattcagtatgaagatgaaggactttatgagtgtgag
gctgaaaactataaaggaaaagataaacatcaagcaagagtttatgtgcaagcctctcca
gagtgggtagaacatatcaatgacacagagaaggatataggcagtgacctctactggcct
tgtgtagctacaggcaagcctattccaacaattagatggttgaagaacggtgcctcgttc
cggaaaggtgaactaagaattcaaagtctgacctttgaagatgctggcatgtatcagtgt
atagcagaaaacacacatggaattatttatgcaaatgctgaactgaagattgtggcttca
cctcctacttttgaactgaaccctatgaagaagaaaatcctagcagctaaaggggggcgt
gttatcattgaatgcaaacctaaagctgctcctaagccaaaattctcctggagcaaagga
actgaattgcttgtaaatgggagccgcatacgaatctgggatgatgggagcctggagatt
atcaatatcacaaagctggatgaaggtcgctacacctgttttgcagaaaataaccgagga
aaagctaatagcactggtgttctagaaatgacagaagctacaaggattactttagcgccg
ctgaatgttgatgtcaccgttggagagaatgctaccatgcaatgcattgcatcccatgat
cccacattagacctgacatttatttggtctctaaatggctttgtaatagattttgagaaa
gagcatgaacattatgaaaggaatgttatgattaaatccaatggtgaactgcttattaaa
aacgttcagctgcggcatgcaggaagatacacgtgcaccgcacagacaattgttgacaat
tcttcagcttcagctgaccttgttgtaagaggtcctccaggccctcccggaggtataaga
gtggaagaaattagagacactgctgtagcacttacgtggagtcgtggaacagacaatcat
agccctatttctaaatacactatccagtcaaaaacttttctgtctgaagagtggaaagat
gccaaaacagagccatcagatattgaaggaaatatggagtctgctagagtgattgattta
attccgtggatggaatatgagttccgaataatagcaacaaacactttgggaataggagaa
cctagtatgccatcacagagaattagaactgaaggcgctcctcctaatgtggctccttct
gatgttggaggagggggtggaagcaatcgagagctgacaataacatggatgcctttgtca
agagaataccactatggcaataactttggttacatagtggctttcaagccatttggtgag
aaagaatggagaagagttacagttactaatcctgaaattggacggtacgtccacaaagat
gaatcgatgccaccttcgacccagtatcaagtaaaagtgaaagcttttaacaacaaaggg
gatggaccattcagtctcactgctgtcatttattcagctcaagatgctccaactgaggta
cccacagatgtgagcgtaaaagttttgtcatcttctgaaatttctgtttcttggcaccat
gtttctgagaaatctgtggaaggatatcagattcgttactgggctgctcatgataaagaa
gcagctgcacagcgggtacaagtaagcaatcaagaatactcaaccaaactggaaaacttg
aagccgaatacacgctaccatgtagatgtttctgccttcaatagtgcaggctacggacct
cccagtagaaccattgatattattaccaggaaagcacctccaagccaacgtccaagaatt
atcagttctgtaagatctggttcaaggtacatcatcacctgggatcatgtgaaggcaatg
tcaaatgagtctgcagttgaaggatacaaagtgttatataggccagatggacaacacgaa
ggcaagttgttttcaactggaaaacacacaatagaggtcccagtccccagtgatggtgaa
tatgtcgttgaggtccgagcacacagtgaaggaggagatggagaagtagctcaaattaaa
atttcaggtgccactgctggagtaccgactctgcttctgggcctggtgctgcctaccctc
ggtgtccttgcctactcgggattctga
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