Cygnus atratus (black swan): 118246902
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Entry
118246902 CDS
T09349
Symbol
TRIP12
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIP12
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
cata
Cygnus atratus (black swan)
Pathway
cata04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
118246902 (TRIP12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cata04121
]
118246902 (TRIP12)
Enzymes [BR:
cata01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
118246902 (TRIP12)
Ubiquitin system [BR:
cata04121
]
Ubiquitin ligases (E3)
HECT type E3
118246902 (TRIP12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
UNC45-central
HEAT_2
HEAT_Maestro
Motif
Other DBs
NCBI-GeneID:
118246902
NCBI-ProteinID:
XP_035400274
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All DBs
Position
9:2624871..2699242
Genome browser
AA seq
2060 aa
AA seq
DB search
MSNRPNNNPGGSLRRSQRNTAGAQPQDDAVGGRSHLGQAKHKAHSPPESRKSISKTPKVQ
SNTTSEQSKGHFSKRGCSSSAVLIPQQEDPERVNTSEKQKTGQVPKKENSRGVKRSASPD
YSRTNSSSAKKPKALQHTETSLETNKPHTKSKRRHLDQEQSKSTQLPSTSKAHTRKGGAA
GSSRSQKRKRTESLSCIKSGSAVESTGAEEKSAKPSKLASKSVTSAKAGCSTITDSSSSA
STSSSSSAVASAASTVPQGARVKQGKDQNKARRSRSASSPSPRRSSRDKEQSKTGGSSKF
DWAARFSPKVSLPKTKLSLPGSSKSETSKPGPSGLQAKLASLRKSTKKRSESPPAELPSL
RRSTRQKTTGSCASTSRRGSGLGKRGTAEARRQEKMADPDNNQDGVNSSAARTDEAPQGA
AASSSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTIGSG
ASSKAQQLLQGLQATDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN
FDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRRHS
KAILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVADSLPLLTQRLTHQ
DKKSVESTCLCFARLVDNFQHEENLLQQVASKDLLTNIQQLLVVTPPILSSGMFIMVVRM
FSLMCSNCPTLAVQLMKQNIAETLHFLLCGASNGSCQEQIDLVPRSPQELYELTSLICEL
MPCLPKEGIFAVDTMLKKGNAQNTDGAIWQWRDDRGLWHPYNRIDSRIIEAAHQVGEDEI
SLSTLGRVYTIDFNSMQQINEDTGTARAIQRKPNPLANTNTSGHSDLKKDDARAQLMKED
PELAKSFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIYFADAELLKDVLKNHAVSSHI
ASMLSSQDLKIVVGALQMAEILMQKLPDILAXYFRREGVMHQVKNLAESEALLTSPPKVC
TNGSGTLGATTTISTGTATAASNAAADLGSPSLQHSREDSLDLSPQGRLSDVLKRKRLPK
RGPRRPKYSPPRDDEKVDNQAKSPTTTQSPKSSFLASLNPKTWGRLSTQSNSNNIEPART
AGVSGLARAASKDTISNNREKIKGWIKEQAHKFVDRYFSSENMDGSNPALNVLQRLCTAT
EQLNLQVDGGTECLVEIRSIVSESDVSSFEIQHSGFVKQLLLYLTSKSEKDAVSRDIRLK
RFLHVFFSSPLPGEEPLGRLEPLENAXLLALVHKMNNCLSQMEQFPVKVHDFPSGNGTGS
RGSQALKFFNTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVVRGYGRVRE
DDEDSDDDGSDEEIDESLAAQFLNSGNVRHRLQFYIGDHLLPYNMTVYQAVRQYSLQAEE
ERESTDDESNPLGRAGIWTKTHTIWYKPVREDEDGNKDCVGGKRGRAQTAPTKTSPRNSK
KHDELWHDGVCPSVLNPLEVYLISSPPENITFEDPSLDVILLLRVLHAISRYWYYLYDNA
ICKEIIPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDTRQMLFY
VTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTVNRDELLKQAESVMQDLGSS
RAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLANPKGSQEGTKYIHN
LQGLFALPFGRTAKPAHIAKVKMKFRFLGKLMAKAIMDFRLVDLPLGLPFYKWMLRQETS
LTSHDLFSIDPVVAKSIYHLEDIVRQKKRLEQDKTQTKESLQYALEALTMNGCSVEDLGL
DFTLPGFPNIELKKGGKDTPVTIHNLEEYLRLVIFWALNEGVARQFDSFRDGFESVFPLS
HLQYFYPEELEQLLCGSKTDTWDAKTLMECCRPDHGYTHDSRAVKYLFEILSSFDSEQQR
LFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPDYSTIE
IMREKLLIAAREGQQSFHLS
NT seq
6183 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaataacaatccaggggggtcactgcgacgttcacagaggaacact
gctggggcccagccacaagacgacgcagtaggaggaaggtcacatttagggcaggcaaaa
cataaggcacatagccctcctgagagtagaaaatctatttcaaagacacccaaagtgcag
tctaatactacttctgagcagtccaagggacacttttccaaaagaggctgtagttcatct
gctgttttaataccacaacaagaagatccagaaagagtcaatacttcagaaaagcaaaaa
acggggcaagtgcctaagaaagaaaattctcgaggagttaaacgcagtgctagtccagat
tacagcaggaccaattctagctctgctaaaaaacccaaagcacttcaacacactgaaact
tccttggaaactaacaagccacatactaaatctaagagaagacacttagaccaagaacag
tctaagtctacacaattgccatcaacgagcaaggctcataccagaaagggtggagctgct
ggtagctcccgaagtcagaaaaggaaaaggacagagagtctgtcttgtataaagagtggt
tcagcagttgaatcaactggcgctgaagagaagtcagcaaaaccctccaagctggcttca
aaatcggtgacctcagccaaagctgggtgtagcaccatcactgattcttcttcttcagct
tcgacatcctcttcctcttctgctgttgcctctgctgcttctaccgttcctcagggtgcc
agagtgaaacagggaaaggaccagaataaggctagacgttcccgttctgcatccagcccc
agtccaagaaggagcagcagggacaaagaacagagtaaaacaggtggctcttcaaagttt
gactgggctgctcgattcagtccaaaagttagtctccctaaaacaaagctgtctctacca
ggctcttccaagtcagagacatcaaaacctggaccttcgggactacaggccaagctagca
agcctaagaaaatccacaaagaagcgcagtgaatcaccacctgctgagctccccagtttg
cggcggagcacacggcaaaagaccacgggctcctgtgctagtaccagtcggcgaggctct
ggcctgggcaaaagaggaacagctgaagctcgccgacaggagaagatggctgatcctgac
aacaaccaggatggagttaactcttcagctgcgcgtactgatgaggctccccagggagct
gcagcttctagttctgttgctggagctgtaggtatgacaacatctggagaaagtgagtca
gatgactctgaaatgggaagactacaagctctattagaggctaggggtcttcctcctcac
ctgtttggccctcttggtcctcggatgtcgcagctcttccacaggacaattggaagtgga
gctagttctaaagcccaacagcttttacaaggtctgcaagccactgatgaaagtcagcaa
ctacaggcagtgattgagatgtgccagctgttggtcatgggaaatgaagaaacattagga
ggatttccagtcaagagtgttgtaccagctttgataacattgctgcagatggagcacaac
tttgacataatgaatcatgcttgtcgggccttaacatacatgatggaagcacttcctaga
tcatctgctgtagtggttgatgcaattcctgtcttcttggaaaagctgcaagttattcag
tgcattgatgtggcagagcaggcgctgacagccctagagatgttatcacgcaggcatagt
aaagccattctgcaggcaggtgggttggcagactgcttgctctatctggaattcttcagt
ataaatgcacagaggaatgcattagctattgctgccaactgctgccagagtataacacct
gatgagtttcactttgtggcagactctttgccactgcttacacaaaggctaacccatcag
gacaaaaagtccgttgaaagcacttgtctctgttttgcacggctagtggacaacttccag
catgaggagaacttgctccaacaggttgcttctaaggacttgttaacaaatatccagcaa
ctcttggtagtgacgcctccaatcctgagctcaggaatgttcatcatggtggtgcgcatg
ttttccttaatgtgctccaattgtccaacacttgcagtccaacttatgaagcaaaatatt
gcagaaactcttcactttctcctttgtggagcctcaaatgggagttgtcaagaacaaatt
gaccttgttccacgaagtcctcaagaactttatgagcttacttctcttatctgtgaactg
atgccttgtctgccaaaagaggggatctttgctgttgatactatgctgaagaaaggaaat
gcgcaaaataccgatggtgcaatatggcaatggcgagatgacaggggtctctggcatccc
tataacaggattgatagtcgaataatagaggcagctcatcaggtgggtgaggatgagata
agcctgtcgacacttgggcgtgtctatactattgattttaactctatgcagcaaataaat
gaggatactggaacagcacgtgccattcagcggaaaccaaaccctttagccaatacaaac
actagtggacattcagatttgaagaaggatgatgcccgagcacaactaatgaaagaagac
ccagaactggcaaaatcctttattaaaacattgtttggtgtcctttatgaagtatatagt
tcttcagctggacctgctgttagacacaagtgccttagagcaatacttaggataatttat
tttgctgatgctgaacttctgaaggatgtgctgaaaaaccatgctgtttcaagtcatatt
gcctccatgctgtcaagtcaagaccttaagatagtagttggagccctgcagatggcagaa
atcttaatgcaaaagctacctgacattttagcgnnttacttcagaagagaaggagtgatg
caccaagtgaaaaacttagcagagtctgaggctttgctaacaagcccaccaaaagtatgc
actaatggatcaggaacgctgggtgccactacaacaataagtactggaacagccactgct
gccagtaatgcagctgcagatttgggctctcccagcctacaacacagccgggaggattct
ttggatctgagcccacagggacgactgagtgatgttctaaagagaaaaagactgccaaaa
cgagggccaaggagaccaaaatattctcctccaagagatgatgagaaagtagacaatcaa
gctaaaagccctacaactactcaatctcctaaatcttccttcttggcaagtttaaatcct
aaaacatggggaagattaagcacacagtctaacagtaataacattgaaccagcacgaaca
gcaggagtaagtggtcttgcaagggctgcttccaaggatacaatttctaataacagagaa
aaaattaagggctggattaaggagcaggcccataaatttgtagaccgttactttagttct
gaaaacatggatggaagcaatcctgcactaaatgttttacagagactttgcactgcaact
gaacaactcaacctccaggtggatggtggaacagagtgccttgtagaaatccgtagcatt
gtctcggagtctgacgtgtcctcatttgaaatccagcatagtggatttgtgaaacaactg
ctgctttatttgacatctaaaagtgagaaagatgctgtaagcagggatatcagattgaaa
agatttcttcatgtatttttttcctctccacttcccggagaagagccccttggaagatta
gagccattagaaaatgcanccttgttggcattagtccataaaatgaacaattgcctcagt
cagatggaacagttcccggtcaaagtgcatgacttccccagtggaaatggaacagggagc
agaggatcacaagctttaaagttcttcaatacacatcaattaaaatgccagctgcaaaga
catccggactgtgcaaatgtgaaacagtggaagggtggacctgtgaagattgatcctctg
gctttagtacaagccattgaaagataccttgtagttagaggttatggaagagttagagaa
gatgatgaagatagtgatgatgatgggtcagatgaagaaatagatgaatctttggctgct
caattcttaaattcagggaatgtgaggcatagactgcaattttacattggagatcacttg
ctgccatataatatgactgtgtatcaagcagttaggcagtacagtttgcaagctgaggag
gagagggagtctacggatgatgaaagcaacccattaggaagagctgggatttggacaaaa
acacataccatttggtacaaacctgtgcgagaggatgaagatggtaacaaggactgcgtt
ggtggtaaaagaggaagagcgcaaactgctccaacgaaaacttcacctagaaattctaaa
aagcatgatgaactgtggcatgatggtgtatgcccttcggtattaaatcctttagaagtt
taccttatatcttctccacctgaaaacataacgtttgaagatccttcattagatgttatt
cttcttttgagagttttacatgctatcagtcgatactggtattatttgtatgataacgca
atctgcaaggagattattccaacatcagaatttatcaacagtaagctgacagcaaaagca
aacaggcagcttcaggatcctttggtaattatgacaggaaacataccaacctggctgaca
gaacttggaaaaacatgcccttttttctttccgtttgatacccggcaaatgctgttttat
gtaactgcttttgatcgtgatcgagccatgcaaagactactggatactaatccagaaatc
aatcagtcagattctcaggatagcagagtggcaccacggctggacaggaaaaaacgcact
gtgaacagagatgagctgttgaaacaggcagaatctgtgatgcaggatctaggcagttca
agagccatgttggaaatccagtatgagaatgaagttggcacaggcctaggccctacacta
gagttctatgcacttgtatctcaggaactacagagagcggatttaggcctttggaggggt
gaagaagtaactttagccaatccaaaaggaagccaggaaggtaccaagtatattcataat
cttcaaggcctttttgcacttccttttggtagaaccgccaagccagctcacattgcaaaa
gttaaaatgaagttccgctttttgggaaaactaatggcaaaggcaatcatggattttaga
ctggtggaccttcctcttggacttcctttttataagtggatgttacggcaggaaacttcc
ttgacatcacatgacttgttcagtattgatccagtagtagccaaatcaatatatcacctt
gaagatattgtaagacaaaagaaaagacttgaacaggacaaaacgcagaccaaagaaagt
ctacagtatgcattggaggctctgactatgaatggctgctcagtggaagatctagggctg
gacttcacacttcctgggtttcctaatatagagctgaaaaaagggggaaaagacacgcca
gtcaccatccataatttagaggagtaccttagattggtgatattctgggcactaaatgaa
ggcgttgccagacagtttgactctttcagagatgggtttgaatcggtcttccccctcagt
catcttcagtacttctatcctgaggagttggagcagctcttgtgtggcagcaaaactgac
acctgggatgcaaagacattaatggaatgttgcaggccagatcacggttatacacatgac
agtcgagcagtgaagtatctctttgaaattctcagtagttttgatagtgagcagcaaaga
ctgtttcttcagtttgtgacgggtagccccagactgcctgtaggaggctttcgaagtttg
aatcctccattgacaattgtacgcaagacatttgagtctacagagaatccggatgacttc
ttgccctcagtaatgacttgtgtgaactatctcaaattgccagactattcaaccattgag
ataatgcgtgaaaaactcttaatagctgcaagagaagggcagcagtcattccatctttcc
tga
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