Cygnus atratus (black swan): 118246947
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Entry
118246947 CDS
T09349
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
cata
Cygnus atratus (black swan)
Pathway
cata04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
118246947 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cata04131
]
118246947 (VPS8)
Membrane trafficking [BR:
cata04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
118246947 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
Beta-prop_WDR36-Utp21_1st
TPR_VPS8_2
zf-RING_Vps41
WD40_CDC20-Fz
Clathrin
TPR_Vps41
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_2
Beta-prop_WDR5
zf-RING_UBOX
Beta-prop_WDR3_1st
WDR55
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
118246947
NCBI-ProteinID:
XP_035400391
LinkDB
All DBs
Position
9:10017848..10096680
Genome browser
AA seq
1402 aa
AA seq
DB search
MDAAPEPSACPAGAGAEAEPGGLPGLGPPAPRLTAAELDRELDSRSELIDDKEFDIPQVD
TPPTLESILNETDDEEESFILEDPFLLNIDNTDTHSYDTSSVASSDSGDRTHLKRKKKLP
DSLSLHGSVIRLSLLKGISAQIVSAADKVDAGLPTAIAASNLIAVGTSHGLALIFDQNQA
LRLCLGSTAVGAQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHPPGT
AILHIKFTDDPTLAICNDSGGSVFELSFKRVMGVRTCESRCLFSGSKGEVCCIEPLHAKV
ELRDHPITQYSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVQNSV
NPMLAFCRGDVVHFLLVKRDDTGAIHVTKQKQLHLHYDLINFTWINSRTAVLLDSVEKLH
VIDRQTQEELETIEIPEVQLVYNSSHFKSLATGGNVSEALALVGEKACYQSISSCGGQIF
YLGTKSVHVMTLRSWRERVDHLLKQERLTDALALAWSFYEGKAKAVVGLSGDTSKRKAVI
ADRMVEILLHYADRTLKKCPDQGKIQVMEQHFQDMVPVIVDYCLLLQRTDLLFNQIYDKM
SENSVAKGIFLECLEPYILSDKLMGITAQVMKDLLLHFQDKNRLENMEACIVHMDITSLD
IQQVVLLCWENHLYDAMIYVYNSGMNDFISPMEKLFKVIAPPLNAGKSLTDEQVVMGNKL
LVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSTEGSVDEEVYPHIRTLLHFDT
REFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKP
NNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIQMAEKAEF
YQICEFMYERELRYDKIIGCYLRDPVRKEEVFNYIHNILSMPGYSTEEKQSVWDKALEHI
KELLLLSPCKAADLVAIHFSEQIESIITNLQDQFLLFQFLRSLLDPREGINQDLIHLPPC
ITEQFIELLCQYSPDDVLETLKVLEYCRLEETIQITQKHQLHEASSYLLEKKGDIHGAFL
VMLERLQSKLLMLTQDDESSEQLPLLENIEDTLMKTIALCQRNSHNLNQQQQEALWFPLL
EAMMSPQKLSGSSQYRYAESLKSLTMQVLNNMAAFIALPSILQRILQDPVYGKGKLGEIQ
GLVLGMLDTFNYEQTLLETTTNLLNHDLHWSLCNLRASVTRGLTPKQDYCCICLQQYKRR
QETADEIIVFSCGHLYHSLCLLSKECGVVTKGLMQWMCYKCNSSNKGGKLSENFSELKKG
SVTSLAQTGSESVLDPQQIQAFDQLCRLNRGTSRLALLTELSRTHGEKHGPLSVAHGDPT
ASSVFQNETFQLHLAPPPLVEE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggcgccggagccgagcgcctgccccgcgggagccggagccgaggccgagccg
ggcgggctgccgggcctggggcctcccgctccgcggctgaccgcggcggagctcgaccgc
gagctggactcccgcagcgagctgattgatgacaaagaattcgacattcctcaagttgat
acccctccaacgctggaaagcatcttaaatgagactgatgatgaagaagagtctttcatt
ctggaggatccttttctcttgaacatcgataacacggatacacattcctatgacacatct
tctgtagcaagttctgacagtggggatcggacacacctgaaaaggaagaaaaaactccca
gattctctttctctccatggatcagttatacgactctcgcttctgaaaggaatttctgcc
cagattgtatctgcagcagacaaagtggatgctggcttgcccactgcaatagcagcatca
aatctgatagcagtggggacttctcatgggttagcactgatttttgaccaaaaccaggcc
cttcgactgtgtctgggcagcactgctgttggggcccagtatggggctatctcggctctc
agcatcaacaatgactgttcgaggctcctgtgtggctttgcgaaaggacagatcacaatg
tgggatctggccagtgggaagctgctacgatcaataacagatgcccaccccccaggaaca
gctattttgcacattaagtttacagatgacccgacacttgcaatttgcaatgatagcgga
ggctccgtatttgaactgtcatttaagagggttatgggagtgagaacatgtgaatctcga
tgtctcttcagtggctcaaagggggaggtttgctgtattgaaccactacatgcaaaagtt
gagctgagagaccatcctatcacccagtattcgctattggccatggcctccctgacaaag
atactagttattggcctgaagccatctctgaaagtgtggatgacttttccctatggtcgt
atggacccttctagtgtccctcttctggcgtggcattttgtggctgtacagaactctgtg
aaccccatgcttgcattttgtcgaggcgatgtcgttcattttcttttggtaaagagagat
gatactggtgcaatacatgtcactaagcagaagcagctccatctacactatgacctcatc
aacttcacttggataaattcacggacagcagtgcttctggacagtgtggagaagctgcac
gttatagatcgtcagacacaagaggagctggagaccatagagattccagaagttcagctg
gtctacaacagcagccacttcaaatcgctggctacaggaggcaatgtcagtgaagcactg
gcattggttggagagaaagcttgctaccagtccatcagcagctgtggtggtcagatcttt
tacctgggaactaagtctgttcacgtcatgacattgaggagctggagagagagagttgac
caccttctgaaacaagagcgtctcactgatgccctggctcttgcttggtccttttatgaa
ggtaaagcaaaggctgtagtaggcttgtctggggacacgagcaagcggaaagcagtcatt
gcagacaggatggttgaaatccttctccattatgctgatcggactttgaagaaatgtcct
gaccaaggaaaaatccaggttatggagcaacattttcaggatatggtgcctgtcatagtt
gattactgcctcttactccagcgcacggatctgttatttaatcagatatatgataagatg
agtgagaattctgtagctaaaggcatctttctggagtgcttggagccatatatcttgagt
gataagctgatgggaattacagctcaagtgatgaaagacttgctgcttcacttccaagac
aagaacaggttggaaaatatggaagcttgcattgtgcatatggatatcaccagcttagac
atacagcaggtagttcttctgtgctgggaaaaccatctctacgatgccatgatctacgtc
tacaacagtgggatgaatgacttcattagccccatggagaagctgttcaaagtcattgct
cctccgctgaatgctgggaagtctctcacagatgaacaggtggtaatgggcaacaagctg
cttgtatatataagctgctgcttggcaggccgtgcgtatccactgggtgatattcctgaa
gatctggtacctctggttaaaaatcaggtctttgaatttctcatccggctacattcaact
gagggatctgtggatgaagaggtctaccctcacattcgtaccttgctgcactttgacact
cgggaattccttaatgttcttgctctgacttttgaagactttaagaatgacaagcaagct
gtggaatatcaacagcgaatcgtggacatacttctgaaagtcatggtagagaattctgac
ttcaccccatcacaggttggctgtctctttactttccttgcccgtcagcttgccaaaccc
aacaacacgttgtttgtgaacaggacgctttttgaccaggtccttgaatttctgtgtagt
ccagatgatgactcccgccattcagagaggcaacaggtccttttagaattgcttcaggca
ggagggatagtacagtttgaagagagccgtcttatccaaatggcagaaaaagctgaattt
tatcagatttgtgagtttatgtatgaacgagagcttcgctatgacaaaatcattggctgt
tacctgcgtgatccagtgagaaaggaagaagttttcaactatattcacaacatcctgtcc
atgcctggttacagtactgaagaaaagcagtcagtgtgggacaaagctttggaacatata
aaggagttgctgctacttagcccatgtaaagcagctgacttggtagccatccacttcagc
gagcagattgagagcatcattacaaaccttcaggaccagttcttactcttccagtttcta
aggagtctgcttgatccgagagaaggcatcaaccaagacttgattcatttgccaccctgc
atcacagagcagttcattgagctgctgtgtcagtacagcccagatgacgttttggagacg
cttaaagttctggaatactgcaggctggaagaaaccatccagataacccagaaacatcag
ctccatgaagcttcctcatatttactggagaagaagggagatatccacggtgcctttctg
gtcatgcttgagcgattgcagagcaagttgctgatgcttacacaagatgatgaaagttca
gaacaactccccttgctagaaaacattgaagataccttaatgaaaaccattgctctttgc
cagaggaattcacacaacttaaaccaacaacagcaagaggcactctggtttcccctactg
gaggctatgatgtccccacagaaactgtctggttcttcacagtatcggtatgctgaatcc
ttgaagagtttgacaatgcaagtgctgaacaacatggctgcatttatcgctcttccctca
atcctccagagaattctgcaggatccagtttatggaaaagggaaacttggagaaattcaa
ggacttgtcctgggaatgctggacacttttaactatgaacaaacccttctagagacaact
acaaatcttttaaaccatgatctccactggtccctgtgtaacctaagagcttctgtcact
agagggcttaccccaaagcaggattactgctgcatttgtctacagcagtacaaaagaagg
caagaaactgctgatgaaatcattgttttcagctgtggccacttgtaccattctctgtgt
ctgctgagtaaagagtgtggggtagttaccaaaggccttatgcagtggatgtgctataaa
tgcaattcaagcaacaagggaggaaaactgagtgagaacttctcagagctgaaaaaagga
agtgtgacatccttggcgcagacaggttcagagtctgtgttagatcctcagcaaatccaa
gctttcgaccaactctgccgactcaaccgaggaacctccagactagctctcctgacagaa
ctgtcccgcacccatggtgaaaagcacgggccgctcagcgttgcgcacggtgaccccacc
gccagcagcgtcttccagaatgagaccttccagctgcacctggcgccccccccgctggtg
gaagagtag
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integrated database retrieval system
