Cygnus atratus (black swan): 118246998
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Entry
118246998 CDS
T09349
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
cata
Cygnus atratus (black swan)
Pathway
cata04136
Autophagy - other
cata04140
Autophagy - animal
cata04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
118246998 (ATG16L1)
04136 Autophagy - other
118246998 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
118246998 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cata04131
]
118246998 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
cata03029
]
118246998 (ATG16L1)
Membrane trafficking [BR:
cata04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
118246998 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
118246998 (ATG16L1)
Mitochondrial biogenesis [BR:
cata03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
118246998 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
ATG16
WD40
Beta-prop_THOC3
Beta-prop_IFT122_1st
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_WDR3_2nd
WD40_Gbeta
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
DSE1_N
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_EIPR1
CFAP251_N
NBCH_WD40
Beta-prop_VPS8
Beta-prop_IFT140_1st
Beta-prop_ACSF4
eIF2A
Beta-prop_NOL10_N
WD40_RFWD3
Beta-prop_NWD2_C
Beta-prop_HPS5
Beta-prop_DCAF12
Beta-prop_WDR19_1st
Ge1_WD40
Beta-prop_WDR41
Tricorn_2nd
ZapB
INO80F
HEF_HK
Fez1
Nucleo_P87
HTH_6
DUF8181
V_ATPase_I
PALB2_WD40
Tricorn_N
AP5B1_middle
FUSC
CCDC93_CC
DUF6383
DUF6236
FKBP15
BEGAIN_coil
Motif
Other DBs
NCBI-GeneID:
118246998
NCBI-ProteinID:
XP_035400539
LinkDB
All DBs
Position
9:complement(9334761..9356510)
Genome browser
AA seq
608 aa
AA seq
DB search
MASGLRAAGFPPWKRHIAAELRRRDRLQRQAFEEIIGQYNKLLEKSDLHAVLADKLQAEK
YDMQSRHEISPGHDGTWNDVQLQELAQLKIKHQEELTELHKKRGELAQSVIDLNNQMQQK
DKEMQMNEAKIAEYLQKISELETECQELRSKLQDLERANQTLKDEYDALQITFNALEEKL
RKTTEDNQELVSRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEPRDDD
IEVLADETSDTAEETSPVRAVSRASSKRLSQPAGGLLDSITNIFGRRSLSSFPAPQDSAE
PHPGASKEVRVPTTAICVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVLGDRCEPK
GSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDNRLRHTLTGHSGKVLSAKFLLD
NARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRTE
SIVKELELLGRITALDLNSERTELLTCSRDDLLKIIDLRVGAVKQTFSAQGFKCGSDWTR
VVFSPDGNYVAAGSADGALYIWNVLTGKLERTLAKHHSSSINAVAWSPAGAHVVSVDKGN
KAVLWAEF
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggggctgcgcgccgccggcttccccccttggaagcggcacatcgcggccgag
ctgcggcggcgggaccggctgcagcggcaggccttcgaggagatcatcgggcagtataac
aagctactagagaagtcggaccttcacgcagtgctggctgataagctgcaagctgaaaag
tacgacatgcagagcagacatgagatcagtccaggacatgacggcacatggaatgacgtt
cagttgcaggaactggcacagctgaagataaagcatcaagaggagctgacagaactacat
aagaaacgtggcgagttggcccagtctgtaattgatctgaataaccaaatgcagcagaag
gacaaagagatgcagatgaatgaagcaaagattgcggagtatttgcaaaaaatctctgaa
ctggaaacagagtgccaggaattgcgtagcaaactacaagatcttgagcgagctaatcag
acactgaaagatgaatatgatgctctccagatcaccttcaatgccttggaggagaaactg
aggaaaactactgaagataaccaggagctggtctcacgttggatggcagagaaagcacaa
gaagccaatcgcctgaatgcagaaaatgaaaaggattcaaggagacgacaagccaggctg
cagaaggagctagcagaggctgccaaagaacccctgcctgttgaacccagggatgatgat
attgaagtgcttgcggatgaaacctccgacacagctgaggagacgtctccagtgcgagct
gttagccgagcatccagtaagcgactctcccagccagctggaggccttctggactctatc
actaatatctttgggagacgttctttgtcctcgttccccgctccccaggatagcgcagag
ccacatccgggtgccagtaaagaagtgagagtgcccactactgcaatatgtgtctttgat
gcacacgatggggaggtgaatgcagtgcagttcagccctggctcccggttactagcgaca
ggaggcatggaccggagggttaagctttgggaagtcctgggagatagatgtgagcccaaa
ggttccctctctggtagtaatgctgggattacaagcatagaatttgatagtgctggttct
tacctcctggcagcttcaaatgactttgccagcagaatctggacggttgatgacaatcga
ttacggcacactctgacaggtcacagcggtaaagttctgtcagccaagttcttgctggac
aatgcacgcattgtttcgggaagtcatgaccggaccctcaagctctgggacctccgcagc
aaagtttgtataaaaacagtgtttgcaggatctagctgcaatgacatcgtatgtaccgaa
caatgtgtaatgagtggacacttcgataagaaaattcgtttctgggacatcaggaccgaa
agcatagtaaaagaactggagctgcttgggaggatcacagctctggacctgaactccgag
cgaacagagctgctgacctgttcccgtgatgatctactaaagatcattgatctgcgggtt
ggtgctgtcaagcaaacattcagtgcccaagggttcaaatgtggctctgactggacgaga
gttgtgttcagccctgatggtaactacgtggctgctggttcagctgatggggccctctac
atttggaatgtgctcactgggaaattggagaggactcttgcaaagcatcacagttcttct
atcaatgcagtcgcgtggtcaccagcaggtgcccatgtggtcagtgtggacaaaggaaac
aaggctgtcctgtgggctgaattttga
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