Cygnus atratus (black swan): 118247051
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Entry
118247051 CDS
T09349
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
cata
Cygnus atratus (black swan)
Pathway
cata04510
Focal adhesion
cata04512
ECM-receptor interaction
cata04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118247051 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118247051 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118247051 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cata04147
]
118247051 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
cata00536
]
118247051 (COL4A4)
Exosome [BR:
cata04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
118247051 (COL4A4)
Glycosaminoglycan binding proteins [BR:
cata00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118247051 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
118247051
NCBI-ProteinID:
XP_035400620
LinkDB
All DBs
Position
9:3474074..3536780
Genome browser
AA seq
1681 aa
AA seq
DB search
MALPKDSFERIKWLIRAAWWLLVIFSAQEIDGGGYAYIDPCGGQDCSVCRCFPEKGSRGQ
PGELGAQGPIGSLGSTGPAGLPGEKGQRGENGQPGPAGEKGDKGPTGVPGFPGLDGVPGL
PGSEGPRGKRGVDGCNGSRGDPGFPGENGYIGPRGPYGNPGQKGEKGNSVFVSHFGKGPP
GERGDPGPPGIPGSRGSRGPTGPPGYPGQPGLPGIPGYPGLPGEQGNPGIGVDGQKGEPG
DVGLPGPPGSPLLVGPPGAQLFKGEKGQKGLPGITGYRGPRGPKGILGRGEKGEKGIAGF
PGLRGSPGSYGPAGFPGIKGETGAAGFPGQPGYPGIKGDPGEKGPPGPPGAVGTPLLPVK
GPQGDPGFPGPAGDVGSVGPSGPAGPLGRPGDDGASLPGLPGLSGAPGPQGFHGDPGLPG
TGEPLPGRPGYPGPPGLPGQPGRQGLPGLPSVICTDRGIPGEPGAKGQIGLPGRKGEKGE
KGNQGLCSCSAGPPGPRGIQGPPGTQGKKGQMGYPGRHGEKGDPGLSGAMGSPGLPGTPG
SAGQHGEKGEKGDLGRVRIKGIKGERGPAGVPGFPGQRGNDGRDGDLGLPGEKGAEGDSG
IPVPGDKGLPGIPGLPGVKGPIGLPGLGIPGPPGVRGTHGDFGDTGSIGPPGLKGQKGET
VCIVSPSPGNRGPPGFKGVQGPKGLKGLPGRPGPNGFDGQKGQRGRPGAGIPGPEGFRGK
AGDPGEEGERGSTINGKNGAPGPPGIDGQKGVPGDTTYGPPGTPGNRGLPGPPGAQGARG
DPGIPGLQGQPGTPGFPGAKGFRGPEGDIGAPGCPGFPGPPCDTGLPGPPGLRGVIGLPG
PQGLPGFKGQKGDRGLAGPPGIKGLKGSPGSRGPPGPAGYRGLPGLPGNNGPPGFPGQTG
SKGIQGPQGFLGLPGTQGPMGISGVKGEEGKMGPPGPSGECGDMGMKGERGPPGDSGSIN
IRLEKGQKGEPGFPGENGFRGERGEKGNIGFRGAPGFPGKNGVPGLPGDHGDTGLMGFPG
SRGFQGPKGFKGITGFQGQPGDQGDVGLPGMPGNPGLTGPKGSKGKRGDPTLLLGIRGQK
GPPGDPGLTGFCGLPGEKGSPGIQGQPGRPGSKGESGYPGIPGFPGAPGPPGLPGEPGEK
GKEGILGPPGLQGLAGSQGRKGLPGLPGLDGLDGLKGQKGSAGAPGQSETGRPGYSGELG
PKGDRGETGWPGVSIPGAPGERGFPGFPGIRGPVGPAGPMGRSPSSAPPGLPGDQGPPGL
DGIRGQPGKPGPPGETIFVQGDPGDIGIQGAPGISGQRGQQGARGPPGNQGREGPKGPMG
IHGPQGPPGAVGHPGDQGFQGKPGPKGPTGFIGDPGEPGRVDDSCPTIPGPPGEVGQRGD
DGSIGLSGPIGHPGPQGRKGEEGSCGLPGQDGLPGAPGPPGDQGHVGEQGHTGPQGPPGQ
TGIPGPPGPQVRSSSGFLLVLHSQSDREPLCPQGMPKLWTGYSLLYLEGQEKAHNQDLGL
AGSCLPVFNTMPFAYCNINQVCYYASRNDKSYWLSSAAPLPMTPLSEEEIQPYISRCAVC
EAPAQAVAVHSQDQSIPPCPMNWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSA
PFIECQGQRGTCQFFANEYSFWLTTVMPELQFASAPLSGTLKEGQEQRKKISRCQVCLKH
G
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggcattaccaaaggattcgtttgaacggattaagtggcttatcagagctgcctggtgg
ctgctggttattttttcagcacaagaaattgatgggggaggatacgcatatattgaccca
tgtgggggacaggattgttcagtttgtcggtgctttccagaaaaaggatcaagaggtcag
cctggtgagttgggagctcaaggtccaattggatccttgggatctacaggaccagccggt
ctgccaggggaaaaaggacagagaggtgagaatgggcagcctgggccagctggagaaaaa
ggtgataagggcccaactggagttccaggatttcctggtctagatggtgttcctggatta
ccaggaagtgaaggacccaggggcaaacgtggtgtagatggctgcaatggctcaagagga
gacccaggatttccaggcgaaaatggatatattggacctagaggtccttatggaaatcca
gggcaaaaaggagaaaaaggaaattcagtgtttgtttcacattttggaaaaggaccccca
ggagagaggggtgatcctggaccccctggcattcctggttctagagggtcaagaggtcca
acaggcccacctggatacccaggccaaccaggcttgcccggtattccaggttaccctggt
ttgccaggtgaacagggaaatccaggtattggggtagatggacaaaagggggagccgggt
gatgttggacttcctggaccacctgggtcgccattattagttggacctcctggagctcag
ctgtttaaaggagaaaagggccaaaaaggactacccggaataacaggatacagaggacca
cgtggacccaaaggtatacttgggagaggagaaaagggtgaaaaaggcattgctggattc
cctggattgcggggtagtcctggttcttatggacctgcaggctttcctggaataaaggga
gaaacaggagctgctggttttcctggacaacctggctatccaggcataaagggggatcct
ggagaaaaagggcccccaggtcctcctggagctgttggaactccattgcttcccgtgaaa
ggtccacaaggagatcctggatttccaggtcctgctggcgatgtggggtcagttgggcca
tctggtcctgcaggcccactggggagaccaggagatgatggagcaagtctgcctggcctg
ccaggactgagtggggcaccaggacctcaaggttttcatggtgatcctggtttgccagga
acaggtgaaccacttccaggaagacctggatatcctggaccgccaggactaccgggacag
ccaggaaggcaagggttacctggactacctagtgtaatttgtactgacagaggaatccct
ggggaacctggagcaaaaggtcagataggccttccaggaagaaaaggtgaaaaaggagaa
aaaggaaaccaaggcctctgctcatgtagtgctggtcctcctggtccccgtggtatacaa
ggacctccgggtactcaaggaaagaaaggacaaatgggttaccctggaagacacggagaa
aagggtgatccaggcttatctggtgcaatgggatcaccagggctccctgggacacctggg
tctgctggacaacatggtgaaaaaggagaaaagggtgacctaggacgagttagaataaaa
ggaataaaaggtgaaagaggtcctgctggggttccaggatttccaggccaaagaggtaat
gatggcagagatggggatttaggattgcctggggagaaaggagctgagggtgattctgga
ataccagtgccaggtgataaaggactccctggaatcccaggactccctggagtaaaagga
ccaataggactgccaggtttggggattcctggccctcctggagtcagaggtacccatgga
gactttggtgatactggtagtattgggccgcctggtctaaagggtcagaaaggtgagact
gtctgtattgtatcaccatcccctggaaaccgaggtcccccaggttttaaaggtgttcaa
ggaccaaagggtttaaaaggactccctggtcgtcctggaccaaatggctttgatgggcaa
aaaggccagcgaggcagaccaggagcaggaatccctgggccagaaggcttccgaggcaaa
gctggtgatcctggtgaggaaggtgaaagaggatccaccattaatggtaaaaatggtgct
ccaggtccacctggcatagatggtcagaaaggtgttccaggtgatactacatatggtcct
ccaggaaccccaggcaataggggactgccaggaccacctggtgcacaaggagcaaggggt
gatccaggcattcctgggcttcaagggcagcctggtaccccaggatttccaggtgctaaa
ggttttagaggcccagaaggtgatataggagcaccaggctgtccaggcttccctggtcca
ccatgtgacacgggattaccagggccaccaggactcagaggtgtcataggcctgccaggc
cctcaaggcttaccaggctttaaaggtcagaagggagataggggcctagctgggccacct
ggaatcaaaggtctcaaaggctctcctggctcacggggccccccgggtcctgcaggctac
cgaggacttccaggacttccaggtaataacggaccacctggcttcccaggacaaacagga
agcaaagggattcaaggaccccaaggattcctaggactcccaggaacacaaggcccaatg
ggaatctctggtgttaaaggtgaagaaggaaaaatgggtccacctgggcctagtggagaa
tgtggggatatgggaatgaaaggtgaaagaggacctccaggagacagtggctccattaac
attcggcttgagaaaggacaaaagggagagccaggctttcctggtgagaatggatttaga
ggtgaaagaggtgaaaaaggcaatattggtttcagaggtgccccaggatttccagggaag
aacggtgtcccaggactgccaggtgaccatggtgacactggactgatggggtttccagga
tcacggggtttccaaggaccaaagggctttaaaggaattacagggttccaaggacaacca
ggtgaccagggtgatgttggcttaccaggaatgcctggaaacccaggattgactggccca
aaaggatctaaaggcaagagaggtgacccaactcttctgcttggtatacgtggtcaaaaa
gggcctcccggagacccaggattaacaggattctgcgggttacccggagagaagggttca
ccaggtatccaaggacaacctggaagaccaggatccaagggcgagtctggatacccagga
atacctggatttccaggagctccaggtcctccaggattgccaggagaacctggagaaaaa
gggaaagaaggaattttgggacctccaggattgcaaggattagctggatcacagggcagg
aaaggtcttcctggactgcctggactggatggcttggacggactaaaaggtcaaaaaggt
tctgcaggagctccaggtcaaagtgaaacagggcgcccaggatactcaggagaacttgga
ccgaaaggtgacagaggtgaaactggatggcctggtgtttctattccaggcgcccctgga
gaaaggggattcccaggattcccaggtataagagggcctgttggacctgctggacctatg
ggaagatctcccagtagtgcccctcccggtcttccaggtgatcagggaccacctggttta
gatggcatcagaggtcagcctgggaagcctggtcctcctggagagaccatctttgtgcaa
ggagatccaggcgacattggtattcaaggggcaccaggtatttctgggcagcgagggcag
caaggagccagaggtcctccagggaaccaaggaagagaaggcccaaagggtcctatggga
atccacggcccacagggtccacctggtgctgtaggacacccaggagaccaaggttttcaa
gggaaacctggtcctaaaggtcccacaggtttcattggtgaccctggtgaaccaggaaga
gtagatgactcatgccctacaattccaggacctcccggggaagtgggacaaagaggagat
gatggctctataggattatcagggccaataggtcaccctgggccccaaggaagaaaaggt
gaagaagggtcctgtggcctgccaggtcaagatggtttacctggggcacctggaccacca
ggtgaccaagggcatgtaggagaacaaggacacactggaccacaaggtccacctggccag
actggtatcccaggaccaccaggcccccaggttagatcttcaagtggattcttgcttgtc
cttcacagtcagtcagacagagaaccgctctgtccacagggaatgccaaagttatggacg
ggctatagtctgctgtacctggaaggacaagaaaaagctcacaatcaagatcttggtcta
gcaggatcttgtcttcctgtatttaatactatgcccttcgcttactgtaatatcaaccaa
gtttgttactatgccagccgaaatgataagtcttactggttgtcaagtgctgctccttta
ccaatgacgccactctctgaagaagaaatacaaccctacataagcagatgtgctgtatgt
gaggccccagcccaagcagtagcagttcacagccaagatcagtcaattcctccctgcccc
atgaactggagaagtctttggataggatattcttttttgatgcacactggatctggtgat
cagggtggtggacagtcccttatgtcacctggaagttgcttagaagacttcagatcagca
ccattcattgaatgccagggtcagcgaggaacttgtcagttttttgctaatgagtacagt
ttttggctaacaacagtgatgcctgaactgcagtttgcatcagcccccttgtcaggaact
cttaaagagggacaagagcagaggaaaaaaatcagtagatgtcaagtatgcctgaagcat
ggttaa
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