Cygnus atratus (black swan): 118247322
Help
Entry
118247322 CDS
T09349
Symbol
POLR2B
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03020
RNA polymerase
cata03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
118247322 (POLR2B)
09124 Replication and repair
03420 Nucleotide excision repair
118247322 (POLR2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cata03021
]
118247322 (POLR2B)
03400 DNA repair and recombination proteins [BR:
cata03400
]
118247322 (POLR2B)
Enzymes [BR:
cata01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
118247322 (POLR2B)
Transcription machinery [BR:
cata03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
118247322 (POLR2B)
DNA repair and recombination proteins [BR:
cata03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
118247322 (POLR2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
118247322
NCBI-ProteinID:
XP_035401056
LinkDB
All DBs
Position
4:12338601..12356005
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHATGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY
HLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgacgcggacgaagatatgcagtacgatgaagacgacgatgaaatcaccccggac
ctgtggcaagaggcgtgctggattgtgattagctcttattttgatgaaaagggtttagtc
aggcaacagttggattcttttgatgagtttattcagatgtctgtgcagagaattgttgaa
gatgctccaccaattgatttacaagctgaagcccagcatgctacaggagaagtggaagaa
ccgccacgctatctcctgaagtttgaacaaatctatctttccaaacctactcattgggaa
agagatggagcaccatcacctatgatgcccaatgaggccagactgagaaaccttacgtat
tcagcccccttgtatgtggatataactaaaacagttattaaagaaggggaagatcagtta
cagacgcaacatcagaaaacttttatagggaaaattcctattatgttacgatcgacatac
tgtttgttaaatggcttaactgaccgtgatctttgtgaactgaatgaatgccctcttgat
cctggtggctactttatcattaatggatcagaaaaggttctgatcgctcaagaaaaaatg
gctacaaacacagtatatgtgtttgcaaagaaagattcaaaatatgcctacacaggagag
tgtagatcttgtctggaaaattcctctcgaccaacaagtactatatgggttagcatgcta
gccagaggtgggcagggtgcaaagaagagtgctattggtcagcgcattgtagcaactttg
ccatatatcaaacaagaagtgcccatcataattgtcttccgtgcactagggtttgtgtct
gacagggatattttagagcacataatttatgattttgaagatccagaaatgatggaaatg
gtcaaaccttctctggatgaagcatttgtcattcaggagcaaaacgttgctctgaacttc
attggatcgagaggtgcaaagccaggcgtcaccaaagaaaaaaggatcaagtatgctaaa
gaagtcttgcagaaagaaatgcttccgcatgttggtgtcagtgacttctgtgaaaccaag
aaggcctatttcctggggtatatggttcatcgattgttgctggcagcactgggaaggagg
gagcttgatgacagagatcattatggcaacaaaagactggatcttgctgggccactgtta
gctttcttgttcagaggaatgtttaagaacttgctgaaggaagtgagaatatatgcacaa
aagtttattgacagagggaaagatttcaacttggaactggccattaaaacgagaattatt
tcagatggtttgaaatattcattggcaactggaaactggggtgatcagaagaaagctcat
caagccagagcaggagtatctcaggtgttaaaccgcctgacttttgcatctacgctttcc
catctgagacgcctgaactctccaattggtagagatggtaaactggcaaagcccagacag
ttgcacaatacgctgtgggggatggtttgccctgctgagactccagagggtcatgcagta
ggacttgtcaagaacttagcccttatggcttacatttctgtggggtctcagccatctccg
atcttggaattcttggaagagtggagtatggaaaacctggaagaaatatctccagcagca
atagccgatgctactaagatcttcgttaatggctgctgggtaggaatacacaaagatcca
gagcagcttatgaatacgctaaggaagctccgtcgtcagatggatatcattgtatcagag
gtctcaatgattagggatattcgtgagcgagaaatccgcatttatactgatgcaggcaga
atttgccgaccccttttaattgtggaaaaacagaagttgctgttgaagaaaaggcatatt
gaccaactgaaggaacgagaatacaacaattacagttggcaggatctcgtggccagtggt
gtagtagagtacattgatacactggaagaagagactgtgatgctggcaatgactccagat
gatttgcaagaaaaaggcgttgcatattgttcaacatacacacactgtgagattcaccca
tcaatgatcctgggagtatgtgcatctatcattcctttccctgatcataaccagtctcct
aggaacacataccagtctgctatgggtaaacaggctatgggagtttacattacaaacttc
catgttcgtatggatacgctggcacatgttctatattatcctcagaagccccttgtaaca
acacgctccatggagtacttgcgttttagagagttaccagcaggtatcaattcaattgta
gccattgcatcgtacacaggatataaccaggaagactctgtcatcatgaaccgttctgct
gttgatagaggctttttcagatctgtgttttatcggtcctacaaagagcaagagtccaaa
aaaggatatgaccaagaggaagtttttgagaagcctacacgtgaaacttgccaaggtatg
agacatgcaatctatgacaaactcgatgatgatggcttaatagcacctggggtgcgtgtg
tctggggatgatgtcatcattggcaaaacagtaacgctaccagaaaacgaagatgaactg
gaaagcactaacagacgcttcacaaagagagactgtagcacttttctgcgaactagtgag
actggtattgtcgatcaggtcatggtaacacttaaccaggaaggatacaagttctgcaag
attagggtacgttctgtaagaatcccacaaataggagataaatttgccagcaggcatggt
cagaaaggaacctgtggtatccagtaccggcaagaggatatgcccttcacttgtgaaggc
atcacacctgatataattatcaacccccatgccatcccttcccggatgaccattggtcac
ttgattgaatgtcttcaggggaaggtgtcggcaaacaagggagaaattggtgatgctaca
ccatttaatgatgctgtcaacgtgcagaagatttccaatcttttatcagattatggttat
catctaagaggaaatgaggtcctctacaatggcttcactggtcgaaaaatcacatcacag
atctttattggtcctacatattatcagcggttgaagcacatggtagatgacaaaatccat
tctcgtgcaagagggccaatccagatacttaacagacagcccatggaaggcagatctcgt
gatggtggccttcgttttggagaaatggaacgagattgccaaattgctcatggagcagcc
cagttcttgagagagagattgtttgaagcttccgacccgtatcaagtccatgtatgtaac
ctctgtgggattatggcaattgcaaacaccaggactcacacctatgaatgccggggatgc
cgcaataaaacgcagatatctttggttcgaatgccctacgcctgcaaactcctcttccaa
gaactgatgtctatgagtattgcacctcgtatgatgagtgtttag
DBGET
integrated database retrieval system
