Cygnus atratus (black swan): 118247705
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Entry
118247705 CDS
T09349
Symbol
LTN1
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase listerin
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cata03009
]
118247705 (LTN1)
04121 Ubiquitin system [BR:
cata04121
]
118247705 (LTN1)
Enzymes [BR:
cata01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118247705 (LTN1)
Ribosome biogenesis [BR:
cata03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
118247705 (LTN1)
Ubiquitin system [BR:
cata04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
118247705 (LTN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
LTN1_E3_ligase_5th
zf-RING_2
zf-ANAPC11
FANCL_C
zf-rbx1
HEAT_GCN1
RINGv
zf-RING-like
zf-RING_16
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
118247705
NCBI-ProteinID:
XP_035401814
LinkDB
All DBs
Position
1:complement(109814110..109840519)
Genome browser
AA seq
1772 aa
AA seq
DB search
MGGKNKQRTKGNLRPSSSGRAAELLAKERGTVPGFIGFGTSQSDLGYVPAVQGAEEIDSL
VDADFRMVLRKLSKRDIITKLKAMQEFGMMCKEREAEVVKGVLPYWPRIYCKISLDHDRR
VREATQQSFEQLILKVKKHLAPYLKSIMGYWLIAQCDTYSPAASAAKVAFEKAFPSSKQP
EALAFCKDEILNVLQDHLLKETPDTLSDPQTVPEEEREAKFFRILTCSLLALKKLLSMLP
KKEMQSLEEKLMSLLSQNKFWKYGKHSTPQVRSAFFELASAFCQYLPELVKGEAPRVCPA
VLLSIDDSDAVVCPALWEAVLYVIATVEDCWSHVNAKKGVLPKLWTVLREGGRGLATVIY
PNLLPFISKVPPGITEPKLEYFRTFFSSIIQGLSSERAIASPSESSAIITAFMECLRFAI
LQKVDEEDDQRQIHQMLINDQLIPIINAVLQEPRLQNGPLFYQIAETLSSWETKAEVSSD
DGTEEVFQKLLSNFWDRLLKLCVLHVDKLDADEKPLFALSGMLEVLQNPKTATKPNNRKS
VKIKFKDEDESERNTENGKLTEVRKNSDSEIQADLQHSSLLRKEPLENLVCNLSELSIVY
VNEQKSEQHLKFLSALLSSFSSDRVFQVLLEQGHDTSSTPAESQKETKVHHENPSVQFLY
MNLITWLKEDWRKDTQFLVDILYSVLNCCSSNDERKVILDDLTKMDLKWIIFLQIIQKAC
SSTTKLSLVSDWLKGSTLGERLVMLADDLCHLGLKPVPASTQSASSERWTVLSLVLSQHF
KNESLIGETYVEKIIDKLQAALSKARDLSEAGNTEPSVSFICDVASSFFSSVKGCLLMPS
SEDLLLTIFQLCAQRQDAAHLTDLLVCKLKHTWMSGVKSLVHQLRSMQKQSSTFLLKSAL
WIKNQIQTSTLDVKSLQVLISAVSDLLSTLLEADRQSGCLVGSYVEHVTPNRTEWVKLRE
SLSAEWMHKPLLEGRLSMNCEHLGSRVKLCGTTKLPGHLCTSALLSKMALLLLENGMDHG
NDDAERKKIDNIIAELLYSLQWIEELENPPYLLLEYLHMLEEMHITYEKFSTLSNTADLQ
QTIFDRSEEHGRLWSLTMAKLIRAENTVSCEMKHLFKTSEGFLPLTEGRLHTLQCLSAFL
TEEEKKELVFHCVAKLMTCAQTELSSTDGAFGCLSILNSCLNDTSIDCDHLLPGILKIIM
SWKNDNEDSFLFSCNLKETSAQLLGFNIEMIRYLPLLLKYSTAPLADNEWDFIMCSMLAW
LETTCENHLLYHIPLVQIFACVSCDLASALSAYFESAAPETTENLPVNLISEWKEFFSEG
IHNLLLPLLVKVTGETKTAAEGSFQNSVLTSLGEALTYISKDQLLNHKLPAKFVAGQKTN
LPDKLQTLLNTLSPLLLFWARPVQISVYHMLYKLMPELPKFDDEDLKSYGDEEEESALSP
PAALMSVLATQEVLLENILECIPVGEFAVIQPLSDEFCLVLGYLLTWKLTLTFFKAASSQ
LRVLYSQYLRRTKSLNKLLYHLFRLMPENPVFSGPTLEVPNKDTKTFFTEELHLDVKGTG
ALSSQIPHLACTVYHITLKDLPAMVRLWWNSCEKRVFNVVDKFTSKYVSSVLSSQEISSV
QTSTQLFNGMTVKARSAAREVIATYSVDDIFIELIIQLPTNYPLGSITVESGKRVGVAVQ
QWRNWMLQLSTYLTHQNGSIMEGLSLWKNNVDKRFEGVEDCMICFSVIHGSNYSLPKKAC
RTCKKKFHSACLYKWFTSSNKSTCPLCRETFF
NT seq
5319 nt
NT seq
+upstream
nt +downstream
nt
atggggggcaagaacaagcagcgcaccaagggcaacctgcggccttctagcagtggccga
gccgcagagctcctcgccaaagaacgtggaacagtgcctgggtttattggctttggaacg
tctcagagtgatctcggatatgttcctgcagttcaaggagcagaggaaatagacagcctg
gtggatgctgattttcgaatggtgttgcgaaaactctctaaaagggacatcataacaaaa
ttaaaagctatgcaagagtttgggatgatgtgcaaagaaagagaagccgaagtggttaaa
ggtgtccttccgtattggccaagaatttattgtaaaatctcactagatcatgatcgccgt
gttcgagaagcaacgcagcagtcatttgagcaactgattcttaaagtaaaaaaacacttg
gcaccgtatttaaaaagtatcatgggatactggctgattgctcagtgtgacacttactcc
cctgctgcttctgctgcaaaagtagcttttgaaaaagcttttccttcaagcaaacaaccc
gaagccttagcattctgtaaagatgaaattcttaatgttcttcaagatcaccttctgaag
gaaacacctgatacactcagtgatcctcaaactgtaccagaggaagaaagagaagccaaa
tttttccggattttgacctgttcgttgttagctttaaaaaagttgcttagcatgctgcca
aagaaagagatgcagtcattggaggaaaaattaatgtcacttctgtctcaaaacaaattt
tggaaatatggcaaacacagcacaccacaggttcgttcagctttctttgagctggcttct
gctttttgccagtacttgcctgagctggtgaaaggtgaagcaccaagagtttgtcctgct
gttcttctcagcattgacgacagtgacgcagtggtgtgtcctgctctttgggaagctgtg
ctttatgttattgccactgttgaggactgttggagtcatgtaaatgccaaaaagggagtt
ctaccaaagctatggacagtgcttcgtgaaggtggacgaggcctcgctactgttatatac
ccaaatctcttgccgttcattagcaaggtacctcctggcatcacagaaccaaagctggaa
tatttcagaacttttttcagctctataattcaagggttgtcaagtgagcgagcaatagcc
agtccttcagaaagttcagcaattataactgcatttatggaatgtttgcgctttgccata
ctacagaaagtagacgaagaagatgaccaaagacaaatccatcaaatgctaataaatgac
cagctaattcctataatcaatgctgtacttcaggagcccaggttacaaaatggaccatta
ttttatcaaatagcagaaacactgagctcctgggaaactaaagctgaagtctccagtgat
gatggtacagaagaagttttccagaaactattgtcaaatttttgggaccgtcttttaaaa
ttgtgtgtgcttcatgttgataagttggatgctgatgagaaaccattgtttgccttgtct
ggtatgctagaagttcttcagaatccaaagactgctacaaaaccaaacaacagaaaatct
gtgaaaatcaaatttaaagatgaggatgaatctgaaaggaacacagagaatggaaagctc
acagaagtgagaaagaatagtgactctgaaattcaggctgacctacagcatagttcactt
ctaaggaaagaaccactagaaaatttagtctgtaacctttctgaattgagtattgtgtat
gtcaatgaacagaagtcagagcagcatttgaaattcctttctgccctgctcagttctttt
tcttcagacagagtttttcaagtacttttagagcagggacatgacacaagctctactcct
gctgaatcccagaaagaaacaaaagttcatcatgaaaatccatctgtacaatttctttat
atgaatttaataacttggctgaaagaagactggaggaaagacacacagtttctggttgat
attttgtacagtgtgcttaattgttgcagcagtaatgatgaaaggaaggtcattcttgat
gatttaacaaagatggatctgaaatggattatttttcttcagataattcagaaggcatgt
tcaagtacaacaaaactttccttagtctctgactggctgaaaggaagtacgcttggagaa
agacttgtaatgctggcagatgatctgtgtcacctgggtttaaaacccgtaccagcctca
acacaatcagcctcttcagaaaggtggaccgtcctgagcttggtgttgtcacaacacttt
aaaaatgaatctttgattggggaaacttatgttgaaaagattattgataaacttcaagcg
gctctgtctaaagctagagacctttcagaagctggaaatactgaaccttcagtgtctttc
atctgcgatgtagcctcaagctttttcagctcagttaaagggtgtttactgatgccgtcc
tcagaagacttgctgcttaccatcttccagctgtgcgctcagaggcaggatgctgcacac
ttaacagatttacttgtatgtaagttaaaacacacttggatgtctggtgtaaagtcactt
gtccatcagcttcggagtatgcagaaacagagcagcacctttttgcttaaatctgcactg
tggatcaagaatcaaattcaaacttccactttggatgttaaaagccttcaggttctgatc
tctgcagttagtgatttattgtctacacttctggaagctgacagacagtcgggatgtctg
gtgggatcttatgttgagcatgttacacccaacagaactgagtgggtgaaattgcgcgag
tctctttctgctgagtggatgcacaaacctcttttggaaggaaggctgagtatgaattgt
gagcatttgggatcccgtgttaagctatgtggcacaactaaacttccagggcatctgtgt
acttcagccttattaagtaaaatggcgttgcttttattggaaaatggtatggaccatgga
aatgatgatgctgaaagaaagaaaattgacaatataattgcagagctgttgtattcatta
caatggattgaagagttggagaatcctccttacctgcttcttgaatatcttcatatgtta
gaagaaatgcatatcacatatgagaagttcagtacgcttagtaatacagctgaccttcag
caaacaatatttgataggtcagaggagcatggaagactctggtccttaaccatggccaaa
ctgattcgtgcagaaaacacggtgtcctgtgaaatgaaacatctttttaagacaagtgaa
gggtttctgccattaacagagggcagattgcatacacttcagtgcttatcagccttttta
actgaggaagaaaagaaagaactggtcttccactgcgtggccaaacttatgacatgtgca
cagacagagctctccagtactgatggagcatttgggtgtctttccattttgaactcctgc
ttgaatgacactagtattgattgtgatcatctattacctgggatactaaaaatcataatg
tcttggaaaaacgataatgaggacagctttctctttagctgcaatctgaaagaaacaagt
gctcagttgctgggtttcaacatagagatgatccgttaccttccattgttgctgaagtat
tccacagctcctttggctgataatgaatgggactttatcatgtgctccatgctggcttgg
ttagagacaacctgtgaaaaccatttgctctatcatatcccacttgtgcagatttttgct
tgtgtcagttgtgacttggcatctgcccttagtgcttactttgaatctgcagctcctgag
actactgaaaaccttcctgtgaacttgatcagtgaatggaaagaattcttttctgaagga
attcacaatttgctgttacctttgttggtgaaagtcacaggagaaaccaaaactgcagct
gaaggctcctttcagaactctgtattaacatctttgggtgaagctctaacttacatctca
aaggaccagttgttaaaccataaattgccagcgaagtttgttgcaggccagaaaacaaat
cttccagataaactacagactctgttaaacacactgtctccattgttgcttttctgggct
agacctgtacagatttctgtctaccacatgttgtataaattaatgcctgaattgcctaaa
tttgatgatgaagatctcaaatcttatggtgacgaagaggaagaatcagcattatcgcct
ccagctgctcttatgtctgtccttgccactcaagaggtcttactagaaaacatcctagaa
tgcattccagttggagaatttgcagttattcagcccttgagtgatgagttctgccttgtt
cttggatatcttctcacttggaagttaacgttaactttcttcaaagcggcttcttctcag
ctacgagttctctattcacaataccttagaagaacaaaaagcttgaataaactgctttat
cacttgttcaggcttatgcctgaaaatcctgtcttttctgggccaactttagaagttccg
aataaggatacaaagaccttctttactgaagagcttcatttagatgtcaaaggaacagga
gccctgtcatcccaaattccacacttggcttgtactgtgtatcatataactttgaaagac
ttgccagccatggttaggctttggtggaatagctgtgagaaacgtgtcttcaatgttgta
gataaatttacaagcaagtatgtcagcagcgtgctttcttcacaggaaatatcttctgtt
caaactagcacacagttatttaatggcatgacggtaaaagctcggtctgctgcacgggaa
gtcattgctacctattcagttgatgatatatttattgaactaataatacagcttccaaca
aattacccactggggtccataacagttgagagtggaaagagagttggtgtggctgttcag
caatggcgcaattggatgctacagttaagcacatatctaacgcatcaaaatggaagtatt
atggaaggcttatctttgtggaaaaataatgtggataaacgttttgagggtgtagaagat
tgcatgatctgtttttcagtcattcatggttccaactattctcttcccaaaaaagcttgc
agaacatgtaagaaaaagtttcattcagcttgcttgtacaaatggttcacatccagcaac
aaatccacctgtccgctttgtcgagagacattcttctga
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integrated database retrieval system
