Cygnus atratus (black swan): 118248203
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Entry
118248203 CDS
T09349
Symbol
PDZRN3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cata04121
]
118248203 (PDZRN3)
Enzymes [BR:
cata01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118248203 (PDZRN3)
Ubiquitin system [BR:
cata04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
118248203 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
Sina_ZnF
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
zf-TRAF
Prok-RING_4
Tricorn_PDZ
zf-rbx1
TRAF3_RING
U-box
Motif
Other DBs
NCBI-GeneID:
118248203
NCBI-ProteinID:
XP_035402838
EnsemblRapid:
ENSACYG00000008674
LinkDB
All DBs
Position
10:3904328..4036296
Genome browser
AA seq
1060 aa
AA seq
DB search
MGFELDRFSGDVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQGSCPVNCQRIS
TKELNHVLPLKSLILKLDIKCDNHARGCEAVVPLQQLGEHAETCDFSPAKCRNRGCRQVL
NLRDVEAHMRERCEARPAGLCEQGCGLVLTHGERRAGGHGCLRALRAHGAALQARAAALE
KALKKEALRAGKREQSLLSRLAAAQLELQVTALRYQKRFTQYSARLDALARARAASPGKG
EETKALTLVLHRDSGSLGFNIIGGRPCVDNQDGSSSEGIFVSKIVDTGPAAKEGGLQIHD
RIIEVNGKDLSKATHEQAVEAFKTAKEPIVVQVLRRSPRTKIFTAHESQLVDVGTQTDIT
FEHIMALSKMGSPTPPVSVLDPYLLPEDHPSVHEYYDPNDYMGGIHQEMDRDELELEEVD
LHRVNSQDKLGLTVCYRTDDEDDIGIYVSEIDPNSIAAKDGRLREGDRIIQINGIEVQNR
EEAVALLTSEESKNISLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTAS
MLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDDSTRNDESSEQENNADDHTTSSNTLG
SQKKLTYSHDTLGSGDMQFSNESFISADCTDVDFLGIPVDECERFRELLELKCQVKSASP
YSLYYHNSTLDMSKSDQESVDKELEMLNEELRNIELECLNIVRAHKMQQLKDQYREPWML
HNSGFRNYNTSIDVRRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEISPDNSLRR
TAEGVNCQGNEGAVAYNVSQKNLLAGSESHESSTGKCHSSAKDPDLGKQLESKERKASDG
SKSPTHGQKPSGSYISPYHHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSM
CKDFNTSQSEPRMEWKVKVRSDGTRYITKRPVRDRLLRERAIKIKEERSGMTTDDDAISE
MKMGRYWSKEERKQHLVKAKEQRRRREFMMQSRLDCLKEQQGAEEKKEMNIIELSHKKMM
KKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atggggttcgagctggatcgcttcagcggggacgtggaccccgacttcaagtgcaacctg
tgcaacaaggtcctggaggacccgctgaccaccccctgcggccatgtgttctgcgccggc
tgcgtgctgccctgggtggtgcagcagggcagctgccccgtcaactgccagcgcatctcc
accaaggagctcaaccacgtcctgcccctcaagagcctcatcctcaagctggacatcaag
tgcgacaaccacgcgcggggctgcgaggcggtggtgccgctgcagcagctgggcgagcac
gccgagacgtgcgacttctcgccggccaagtgccgcaaccgcggctgccgccaggtgctc
aacctccgcgacgtggaggcgcacatgcgggagcgctgcgaggcgcggccggccgggctg
tgcgagcagggctgcggcttggtgctcacccacggcgagcgccgagccggcggccacggc
tgcctgcgggccctgcgagcccacggcgccgcgctgcaggcgcgggcggcggcgctggag
aaggcgctgaagaaggaggcgctgcgcgccggcaagcgggagcagtcgctgctgtcgcga
ctggcggcggcgcagctggagctgcaggtgacggcgctgcgctaccagaagcgcttcacg
cagtacagcgcccgcctcgacgccctggcccgcgcccgcgctgcgtcgcccggcaagggc
gaggaaaccaaagcgctgactcttgtcctccatcgtgactcaggctcgcttggatttaat
attattggtggccgaccatgcgtggacaatcaagacggttcatccagcgaaggaattttt
gtatcgaaaatagtcgacacggggcctgctgctaaggaaggagggctgcaaattcatgac
aggattattgaggtcaatgggaaggatttatctaaggcaacacatgagcaggcagtggaa
gcgttcaaaaccgccaaggagcccattgtggtgcaggtcctgaggagatccccacgcacc
aagatcttcactgctcacgagtcccagctggtagatgtgggcacgcagacggatatcact
tttgaacacatcatggctctaagcaagatgggctcacctacaccacccgtctctgtgctg
gacccgtacctcctacctgaagaccatccatcagtgcatgagtactatgatccaaatgac
tacatgggaggaattcatcaagaaatggaccgagatgagttagaactggaggaagtagat
ttgcatagagtgaacagccaggacaagcttggccttactgtatgttaccgaacggacgat
gaggatgacattggtatttatgtcagcgagattgatcccaacagtattgctgcaaaagac
ggtcggctccgagaaggggatcgcattatccaaatcaatggcatagaggtacagaaccga
gaagaagctgtggcacttctcaccagtgaagagagcaagaatatctccttgcttgttgca
agaccagaaattcagctggatgaaggatggatggatgatgacagaaatgattttctggat
gacttgcacatggacatgttagaggagcagcaccaccaggcaatgcaatttactgccagc
atgctccagcagaagaagcatgaggaagatggcggtaccacagacacagccaccatttta
tctaaccagcacgagaaggacagtggcgtggggcgcacagacgacagcactcggaacgat
gagagctctgagcaggaaaacaatgccgatgatcacaccacttcctccaacactttaggg
agccagaagaagctgacttacagtcatgacaccctcggaagtggcgatatgcagttcagc
aacgagtcgttcatctcagccgactgcacagacgtcgacttccttggcatccccgtagac
gaatgtgagcgattccgggaactgctggagctgaagtgccaggtgaagtctgccagccct
tacagcctgtactatcataacagcactctggatatgagcaaaagcgaccaagaaagcgtt
gacaaagagctggagatgctgaatgaggagctgcgcaatatcgagctggagtgcctgaat
attgtgagagctcataaaatgcagcagctgaaagatcagtaccgggagccctggatgctg
cacaacagtgggttccgcaactataacaccagcatcgatgttcgcaggcacgagctctca
gacattacagagctccctgagaagtctgacaaggatagctcgagtgcgtacaacacaggg
gaaagctgccgaagcacaccactcacgctggagatttctcctgacaattcactgcgcaga
actgcggaaggcgtcaactgtcaaggtaacgagggggcagtggcgtacaacgtctcccaa
aagaatttattggctggctcagaaagccatgaatccagcactggtaaatgccattcctct
gctaaagatcccgaccttggcaagcagctggaaagcaaggagagaaaagccagcgatgga
agcaaaagccctacgcatggtcaaaaaccttctggctcctacatctccccgtaccatcac
tccccatataagcatgctcatattcctgcccacgcgcagcactaccagagctacatgcag
ctgatccaacagaaatcagcggtggagtacgcacagagccaaatgagcctggtgagtatg
tgtaaagactttaacacgagccagagcgaaccgaggatggagtggaaagtcaaagtgcga
agcgatgggacgcggtacatcacaaagaggccagtcagggacaggctgctgagagaacgt
gccatcaagatcaaggaagagcgcagcggaatgactaccgatgacgatgccataagtgaa
atgaagatgggccggtactggagtaaggaagagcggaagcagcatttagtgaaggcgaag
gagcagaggaggaggcgtgagttcatgatgcagagcaggctagattgtttaaaggaacag
caaggtgcagaagaaaagaaagagatgaatatcattgaactgagccacaaaaaaatgatg
aagaaaagaaataaaaaaatatttgacaactggatgacaatccaggaactccttacccac
ggaacaaagtcaccagacggcacacgagtgtacaattccttcctgtcagtgactactgta
taa
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integrated database retrieval system
