Cygnus atratus (black swan): 118248384
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Entry
118248384 CDS
T09349
Symbol
SH3TC1
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cata04131
]
118248384 (SH3TC1)
Membrane trafficking [BR:
cata04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
118248384 (SH3TC1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_8
TPR_1
TPR_2
TPR_10
SH3_1
SH3_2
ARM_TT21_4th
ARM_TT21
TPR_7
Csd3_N
SH3_9
TPR_19
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
118248384
NCBI-ProteinID:
XP_035403170
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All DBs
Position
4:66503331..66536453
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AA seq
1354 aa
AA seq
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MMASLAAGGGVSVPSSDGTMEEGTPAPSPEGKQGSNLERKDTEQGMCVPGWECEAANAAM
SAAMSTARDGGKTDTVQEQMDYPQKEKCTNVSSRTLPSQAENFPTDISLKLTMVRRKSGY
PDPRLQRQLREQLRLLENDSREVMAVFSELSARLLSIHSDQDLIVVTFKTFEEIWKFLTY
HSLGFINHCMENLFLDQSFWLCSQEDEETGIEVCVNEKSLKLMYRSLLVQEGAFFVLHPD
NLVTKITATDCETNTYFETAAFTEDVTDGSVDGDMTMLSNVSLEPLIPFHQWFLKVYSDP
IDVTYKTECKSIRQVATGSCLAVMNYESTVPEEISFQEGDKIEILGYLVECMEWFVGRHL
LTGQIGFVKTNYVKLDLPGNKAQDLDFLKAEELSCFSKEKQLEVIHLLKQTSITDVCSVY
RIDQLEEQEFQKTHERVLRKLSSSNLQEIPCSHSNMVSTSKNGRIEEFLKNFKNLEVTRA
EAPATEGKDSAKSPNQEILPPPAGPCFYIYQDDGQASDVFESLLLFLNREEYERDFKSLY
DSSYPFINSMFYGFSEEDELVSFFSIARELAKKAGMSWALARLCFLLGRLSFKKVKFSQA
RVYFEEALGAVTGGFSDLYFVIALYTNLAAIYLTQKNKEKCAHIFDKATSLLMGIPNYIC
SADLESDILKYALKRTILSQNKHAEARACFLLAKHYTARKQHEEALPFLERLQLLLNNLG
LQNNLSNNCYFKLAESYNEKCLPHIVLSCIKVSSSQSSSTLMDSLKRIDLVIKNAPKLYG
LRKLRQILPSQIAPYLIQALSSAFANEQQGLCSTIYLSLAKLYSHHKRYGKAIVYMMKAL
DSDTFAKPEETINYLVSLAWLYILYRQYDVAVTILNAVVDSSRSNPQQLGVAYNMLAIAL
KRKNNTKEAAECCYKALCLSEEANMTHNQAIALANFGALCLHAEANKLAEHYYIKAVKLF
SKLSSMDCGQEFIQVLLQLGCYYVSGTQREKGRFYYEWAFLVAMETSHLESQLQAIKLLC
QFYSTVVPNEAQCVIYNEYQLSLARKMSNKVLEGQILETISQLYLSLGTERAYRSALEYT
KRSLGIFIDLQKKEKEAYAWLRAGKIYYVLRQNELVDLYIQVAQDAALHTGDPNLAMELF
EAAGDIFFNGSWEKEKAVTFYKDRALPLAVEIGNKNTELRLYNKLVELLVNLKVYEESLE
YAKASLMLSVNLGNQLNERIAYHRLAAIHHHLGHCELAEHFYLKALSLCSSPLEFEEETL
YYVKVYLNLGDIIFYDLKDPFDAAGYYHLALAAAMDLGNKKAQLKIYTRLAIIYHNFLVD
REMSLFFYQKARTFATELNVRRINLAPDQCYKSL
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atgatggcaagtttggcagcaggaggtggcgtgtctgtgcccagctctgatggcaccatg
gaggagggaacccctgctcctagtccagagggaaagcaaggcagtaacttggaaaggaaa
gacacagagcagggaatgtgtgtgcctggctgggaatgtgaggcagccaatgctgccatg
agcgctgccatgagcactgccagggatggaggcaagacggacacagtgcaagaacaaatg
gattatccacaaaaagaaaaatgcacaaatgtcagttcaaggacccttcccagtcaagct
gagaattttccaactgatatctccttgaagttaacaatggtaaggcgcaagagtggatac
cccgatcccagactccaaagacagctcagagaacagctccgtcttctggaaaatgacagc
agggaggtcatggcagttttcagtgagctctctgctagattgctctctattcacagtgat
caagatctaatagtggtgacatttaaaacttttgaagaaatatggaaatttctaacttat
cattcattgggttttataaatcattgcatggaaaatttattcctagatcagtccttctgg
ctctgttctcaagaggatgaagaaacaggcattgaagtctgtgtaaatgaaaaatcattg
aagttgatgtacagaagtctgctagtacaagaaggggcattttttgttttacatcctgac
aatctggtaacaaagataacagctacagactgcgaaacgaacacttattttgagactgca
gcttttactgaagatgtaacagatggatctgtggatggtgacatgaccatgctgtctaac
gtttctctggagccactgatcccttttcatcaatggtttctgaaagtgtattctgatcct
attgatgttacatacaaaactgaatgtaaatccatcaggcaagttgcaacgggatcctgt
ctagctgtgatgaattatgaaagtactgtgcctgaagagattagtttccaggaaggagac
aaaattgagatccttggttaccttgttgaatgcatggaatggtttgttggaagacatctg
cttactggccaaataggttttgtaaagacgaattatgttaaactggacttacctggaaat
aaagcacaagacctggattttcttaaagcggaagagctgtcttgtttttcaaaggaaaaa
caattagaagtgatacatttgttgaagcaaacttctatcacagatgtttgctctgtgtat
agaatagaccagttagaagaacaggaatttcagaaaactcatgaacgtgttctaaggaaa
ctgagctcttcaaatttgcaagaaattccatgttcacactctaacatggtatccactagc
aagaatggcaggatagaagaattcttaaagaacttcaagaatttggaggtcacacgggca
gaagcgccagctactgaaggaaaggattctgccaagtctccaaatcaggaaatccttcct
ccacctgcaggaccttgcttctacatctatcaagatgatggtcaagcatctgatgtcttt
gagtcattgctactcttcttaaacagggaagagtatgagagagatttcaaaagcctgtat
gattcctcttatccatttattaatagcatgttttatggcttttcagaagaagacgaactg
gttagcttttttagcatagcaagggagttagcaaagaaagcaggtatgtcctgggcacta
gcaaggctatgctttctattaggcaggctaagttttaaaaaggtgaagttttcccaagct
cgggtttattttgaggaagcgttgggggcagtaactggagggtttagcgatttatacttt
gtaattgccctttacacaaatctagcagccatctacttgacacagaagaacaaagaaaaa
tgtgctcatatttttgacaaggctacatctcttctcatgggaattcccaactacatttgc
agtgctgacttggagtcagatattctgaagtatgctctgaagaggacaattttgagccag
aacaaacatgcggaggcaagggcatgctttctactggcaaaacactacactgcacgcaaa
cagcatgaagaggcactgccctttttagaaaggctgcaattgttgcttaataatttgggt
ttacaaaacaacttatccaacaactgttatttcaaactagcagagtcctacaatgagaag
tgtttgccacacattgtgttaagttgcataaaagtctcctcttcccagagctcaagtact
ttaatggattccttgaaaaggattgatttagtcatcaaaaatgctccgaagctctatggc
ttgagaaaactcagacaaatacttccatcccaaattgcaccttacctgatacaagctctg
tcctctgcatttgcaaatgagcaacaaggactatgcagcaccatctatctcagcttagca
aaactgtacagccaccacaaacggtatggaaaagccattgtttacatgatgaaagcactg
gactctgatacgtttgcaaagccagaggaaactattaactatttggtttcacttgcttgg
ttatacattctttacaggcaatatgatgtggcagtaaccattttaaatgctgttgtagac
tcctcacggagcaatcctcaacaactaggtgttgcttataatatgcttgctattgctttg
aaaagaaaaaacaacacaaaggaagctgctgaatgctgctacaaagctctatgtctttct
gaagaggcaaatatgacccataaccaagctatagccctggctaattttggggcgctctgc
ctgcatgcagaagccaataagctggcagaacattattatatcaaggcagtgaagctattc
tccaaactttcaagcatggactgtggccaagagtttatccaagtcctccttcaactggga
tgttactacgttagtggaactcaaagagaaaaaggaaggttttattatgaatgggcattt
ttagttgcaatggagacaagtcatctggaaagtcagcttcaagcaattaaactgctgtgt
cagttctacagtacagttgttcccaatgaggctcagtgtgtcatctacaatgaatatcag
ctatctttagctagaaagatgtccaataaagttctggagggacaaattttggaaaccatt
agtcagctctacttgtctttaggaacagaaagggcttacagatcagctctggaatatacc
aaaagaagccttggaatatttatagatctccagaaaaaagagaaagaagcatacgcttgg
ctacgggcaggaaagatatattacgttctgaggcagaatgagcttgtggatctttatatt
caggttgctcaggatgctgctctccatacaggagatcccaatttagcaatggaattgttt
gaagctgctggagacatatttttcaatggttcatgggaaaaggagaaagcagtgactttc
tacaaggacagggctcttccacttgctgttgagattggcaacaaaaacactgagctcaga
ttatataataaactggtggaattgctggtgaatctgaaggtttacgaggaaagtctggaa
tatgcaaaagcatctcttatgcttagcgtaaatttaggaaatcagctaaatgaacgaata
gcctatcatcgtctggctgccatccatcatcatttgggtcactgtgaactagctgaacac
ttttatttaaaggccttgtccctctgttcctctcccctggagtttgaggaggaaacattg
tattacgtcaaggtgtacttgaacttaggagacataatattctatgaccttaaggatccc
tttgatgcagcaggctattatcatttggcactcgctgctgccatggacttgggcaataaa
aaagctcaactgaagatttacacaagacttgcaataatctaccacaacttccttgtggat
cgggaaatgtccctcttcttttatcaaaaggcaagaacgtttgcaacagagctgaatgtt
agaagaataaatctagctcctgatcagtgttataagagtttataa
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