Cygnus atratus (black swan): 118248681
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Entry
118248681 CDS
T09349
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03030
DNA replication
cata03410
Base excision repair
cata03420
Nucleotide excision repair
cata03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118248681 (RFC1)
03410 Base excision repair
118248681 (RFC1)
03420 Nucleotide excision repair
118248681 (RFC1)
03430 Mismatch repair
118248681 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cata03032
]
118248681 (RFC1)
03400 DNA repair and recombination proteins [BR:
cata03400
]
118248681 (RFC1)
DNA replication proteins [BR:
cata03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
118248681 (RFC1)
DNA repair and recombination proteins [BR:
cata03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
118248681 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_14
AAA_22
Rad17
BRCT_2
AAA_30
AAA_5
RNA_helicase
RuvB_N
AAA_17
TIP49
AAA_16
nSTAND3
AAA_33
AAA_18
AAA_7
AAA_19
NTPase_1
TCAD2
Motif
Other DBs
NCBI-GeneID:
118248681
NCBI-ProteinID:
XP_035403750
LinkDB
All DBs
Position
4:53644528..53688399
Genome browser
AA seq
1145 aa
AA seq
DB search
MDIRKFFGVVPPGKRQECENVKKSDKIKNGEGDSSGKKRGKETKVKNSPSEDVPKQKQTY
KKKRIIYDSDSEEEVQSVKKSKKPSEKKAATPKLGKVLKQHPVVYVSETDEDDDFVNKRI
SLKPKENGASAISCPGTATVKKEDVKPRAKPKPLSPVKLTPTSALDFFGTSSVQRSEKKL
VASKRKEPSQSRDSTVDDEAIARQLQLEEDSELERQLHEDEEFAKTLAMLDETPQKKKAR
RDSEEQAVLSFKSSPNVTDRYKQSQRVKATNSAGEAKQTKSENSKGSHLPPQSTDGKLAE
ESTDKTLPLKPTSKLVALKRKEEIAEKERGTQSSVSKEKLQGKEEKKTPKKEKISPKKAE
SVSPEDSEKKRNNYQAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVLESIERDE
AKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASALGTKIIDEDGLFDLVRTMPGK
KSKYELAAESEAKKTESRHKKTPQKTEAGKKNFSPLKREADIKKRNYTPEKGGTFKSVKK
ETAAARKLTDFKQQTAEKKEVPKPKGTLVSEINENGTERLLWVDKYKPTSLKAIIGQQGE
QSCANKLLRWLRNWHKNTSEDGQAKVSKLGGKDDGISSKAALLSGPPGVGKTTTAALVCK
ELGYSYVELNASDTRSKNSLKEVVAESLNNTSIKDFCSGTSSSVSGKHVLIMDEVDGMAG
NEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRLEQIKGAMMSI
AFKEGLKIPPPAMHEIILAANQDIRQVLHNLNMWCAKDKSLTYDEAKTDASRAKKDIKLG
PFDVVRKVFAAGEEASRMSLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGDLKKHLML
LSRAADSICDGDLVDKQIRTKQNWNLLPTQAIYSSVLPGELMRGYMSQFPVFPSWLGKFS
STGKHERIVQELAMHMSLRTQMCKRTVNMEYLSYLRDALVQPLKDFGADGVQQAITFMDS
YCLMKEDVENIMEISMWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLNSVKTSKRQS
GSVATSELSEDLNVDEIQSDEDEQDSVESDAMIKQKKAKSSKLPKREKNEEPTKKEGKRK
EKTRH
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atggatatccggaaattctttggtgttgtaccccctgggaagcgacaagaatgcgagaat
gtgaaaaagagtgacaaaataaaaaatggggaaggagactcgagtgggaaaaagagggga
aaagagactaaggtgaagaattcacccagtgaagatgttcccaaacaaaagcagacatac
aagaaaaaaagaatcatctatgattcagattcagaagaggaggtgcagtcagtgaaaaag
tccaagaagccatcagagaaaaaagcagccactccaaaacttggtaaagttctaaagcag
catcctgttgtttatgtttcagagacagatgaagatgatgactttgtcaataaaagaatt
tccctgaaaccaaaggagaatggggcatcagcaatcagttgtccaggaacagcgacggtg
aaaaaggaagatgtaaaaccacgagctaaacctaaaccattatctccagtgaagctgact
cccacctcagctctcgatttctttggaacaagtagtgtccagcgatcagaaaagaaactg
gtagcaagtaaaaggaaggaaccctcacaaagcagggacagcacagtggacgatgaagcc
attgctaggcaactgcagcttgaagaagattcagagctggagagacagttgcatgaagat
gaagaatttgctaagactttggccatgttggatgaaacaccacagaagaaaaaggctcgg
agggattcagaagagcaggcagtactgagcttcaagagcagtcctaatgtgacagacaga
tacaagcaatctcaaagagtgaaagcaacaaactcagcaggtgaagcaaaacaaactaaa
tctgaaaattcaaaggggtcccatttacccccacaatcaactgatggtaaactagcagaa
gagtcgactgataagaccttgcctttgaaacctacctctaagcttgtggctcttaaacga
aaagaagagattgctgaaaaggaaagaggcactcaaagttcagtatcaaaagaaaaactt
cagggaaaagaagagaagaaaacaccaaagaaggagaaaatttctccaaagaaggctgag
tctgtaagtcctgaggactctgaaaagaagcgaaacaattatcaagcctaccgaagcttc
cttaatcgcgagggtccgaaagctctgggttccaaagagataccccaaggagctgaaaac
tgcttggaaggcctgacgttcgtaattacaggagttctggagtctattgaaagagatgag
gccaaatctctgattgaacgttacggaggaaaagtaactgggaatgtcagcaagaagacg
aactacctggttatgggacgagactgtggccaatctaaatgtgaaaaggcatcagcttta
gggacaaaaattattgatgaggatggcctatttgaccttgttcgaactatgccaggcaaa
aagtccaaatatgagctggcagctgaatcggaggcaaagaaaacagagtcgagacataaa
aagacaccacagaaaactgaagctggcaaaaagaattttagccccctcaaaagggaagct
gatattaaaaaaagaaattatactcctgagaagggaggtaccttcaaatctgttaagaaa
gaaactgctgccgctcgaaagcttacagactttaaacagcaaacagcggagaagaaagaa
gtcccaaaacctaaggggaccttggtctctgagattaatgaaaatggaacagagagattg
ctatgggtggataaatacaagcctacgtctctcaaggcaatcattggacagcagggtgag
caaagctgtgccaataaacttctgcgatggctccgaaactggcacaagaatacctcggaa
gatggacaagcaaaggtcagcaaacttggaggcaaagatgatggtattagttctaaagca
gcattactttctggtccacctggagttggtaaaactactacagctgctttagtttgtaag
gaactggggtatagctacgtggagctgaatgccagtgacactcgaagtaagaacagtcta
aaggaagtagttgctgaatcgcttaacaacaccagcatcaaagacttctgttctggcaca
tcctcatcagttagcgggaaacatgtattgatcatggatgaagtggatggtatggcaggc
aatgaagacagaggagggattcaggagttgatcggtctgattaaacacacaaaaataccc
atcatctgcatgtgtaatgatcgaaaccatcctaaaatccgttccttggtccactactgt
tttgatcttcgttttcagagacctcgtctagagcagattaagggtgccatgatgtctatt
gcatttaaagaaggcttaaaaattccaccacctgctatgcatgagataatcctggcagca
aatcaagacatcagacaggttttgcataatcttaatatgtggtgtgcaaaagataaatca
ttgacttatgatgaggccaaaacagatgccagcagagctaaaaaggatatcaaactgggc
ccttttgacgttgtccggaaggtttttgctgctggagaggaggcttctcgtatgtctctt
atagacaaatccgaccttttcttccacgactattccctagcacctctttttgttcaagag
aactacgtacatgtgaaaccagctgctgctgggggagatctgaaaaagcacttgatgctc
ttgagtagagcagctgatagtatatgtgatggtgatctagtggacaaacagattcgtacc
aagcaaaactggaaccttctaccaacacaggctatttattcgagtgttctccccggggag
ctgatgagaggttacatgtcccagtttcctgtctttcccagctggctggggaaattttca
tccacaggcaaacacgaacggattgttcaagaactggcaatgcacatgagtctcagaacc
cagatgtgcaagaggacagtaaacatggagtatctgtcttatctgcgggatgcacttgtc
cagcctttgaaagactttggagcagatggtgtacaacaagctataactttcatggactct
tactgcctgatgaaagaagatgttgaaaatatcatggaaataagcatgtggggaggcaaa
cccagtcctttttcaaagctggatcccaaggtcaaagccgcttttacacgtgcctacaac
aaagaggcacatctgactccgtattcccttaattctgtgaagacatctaaaaggcagtca
ggatccgtggcaacctctgaactgagtgaagacctgaatgtggatgagatccagtctgat
gaggatgagcaagacagtgttgaaagtgatgcaatgattaagcaaaaaaaggcgaagtct
tccaagctgccaaaaagagagaaaaacgaagaaccaacaaaaaaagaagggaaaaggaag
gagaaaacaagacattaa
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integrated database retrieval system
