Cygnus atratus (black swan): 118248706
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Entry
118248706 CDS
T09349
Symbol
TAF5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
118248706 (TAF5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cata03021
]
118248706 (TAF5)
03036 Chromosome and associated proteins [BR:
cata03036
]
118248706 (TAF5)
Transcription machinery [BR:
cata03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
118248706 (TAF5)
Coactivators
SAGA/TFTC/STAGA complex
118248706 (TAF5)
Chromosome and associated proteins [BR:
cata03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
118248706 (TAF5)
STAGA complex
118248706 (TAF5)
TFTC complex
118248706 (TAF5)
SAGA complex
118248706 (TAF5)
SLIK complex
118248706 (TAF5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_DCAF12
WD_LRWD1
Beta-prop_SPT8
Beta-prop_Nup120_160
PEP5_VPS11_N
CDK5RAP3
WD40_like
RAB3GAP2_N
eIF2A
VPS8_N
VID27
Motif
Other DBs
NCBI-GeneID:
118248706
NCBI-ProteinID:
XP_035403786
LinkDB
All DBs
Position
7:complement(13441321..13452168)
Genome browser
AA seq
790 aa
AA seq
DB search
MAAVAEEPPEVAAVKSDPEAGTPPQPPAAAPPAAAATAPAAPPAPAAEGEAAGNGGDAAA
AAKAAAPGPAASPAALDRQTLVAVLQFLRRSNLRESEEILRREARLLGDDLGAAALSPTG
AGLLGAAGGEGDAGGSEALLNRVTAAAAISIGGSVATVASASPGVAAAAAVPPGKVGGGV
VVEDQPDVSAVLSAYNQQGDPTLYEEYYSGLKNFIECSLDCHRAELSQLFYPLFVHMYLE
LVYNQHESEAKSFFERFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRIS
RDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKA
KVFFGLLKEPEFDVPLDDEDEEGENEEGKPKKKKPKKDSVGSKSKKQDPNAPPQNRIPLP
ELKDSDKLDKVMNVKEAARRVRLGPECLPSICFYTFLNAYQGLTAVDITDDSSMIVGGFA
DSTVRVWSVTPKKLRSVKAAADLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGTS
FSPDRNYLLSCSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVAR
LWATDHYQPLRIFAGHLADVTCTRFHPNSNYIATGSADRTVRLWDVLNGNCVRIFTGHKG
PIHSLAFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTIYALRFSRDGEILASGS
MDNTVRLWDAVKAFEDLETDDFTTATGHINLPENSQDLLLGTYMTKSTPVVHLHFTRRNL
LLAAGAYSSQ
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggtagctgaggagccgccggaggtggcggcggtgaagtccgaccctgaggcg
gggacgccgccgcagccccccgccgccgctcccccggccgccgccgccacagcccccgcc
gctcctccggccccggcggctgagggggaagcggcggggaacggcggggatgcggcggcc
gccgctaaggctgcggcaccgggcccggccgcctccccggcggcgctggaccggcagacg
ctcgtggccgtgctgcagttcctgcggcggagcaacctccgcgagtccgaggagatcctc
cgccgggaagcacggctgctcggcgacgacctgggagccgctgccctcagccccaccgga
gccggccttttgggagcagccggcggcgagggggatgccggcggcagcgaggcgctgctc
aaccgggtcaccgccgccgccgccatctcgataggaggcagcgtcgccaccgtcgcctct
gccagccccggggtagcggcagccgccgccgtgccgccggggaaagttggaggaggtgtt
gttgtggaagatcagccagatgtgagcgcagtattgtccgcctacaatcagcagggggac
cccaccctgtatgaggaatactacagtggattaaaaaacttcattgagtgctcgctggac
tgtcatcgagctgaattgtctcaactgttttatcctctctttgtgcacatgtacttggag
ttggtctacaatcagcacgagagtgaggcaaagtctttctttgaaagatttcatggggat
caggagtgttattaccaggatgacctccgtgtattatctagtttaaccaaaaaagaacat
atgaaaggtaacgagaccatgctggatttccgaacgagcaagtttgtgctgcgtatttcc
cgggactcttaccaactcttgaagaggcatctgcaggaaaagcagaacaatcagatctgg
aacattgttcaggaacatctctacattgatatctttgatggaatgcctcgaagtaaacaa
cagatagatgccatggttggaagcttggctggggaggcaaaacgagaggcaaataaagca
aaggtgttctttggcttattgaaagaaccagagtttgatgtgcctttggatgatgaagat
gaagaaggagaaaatgaagaaggaaaaccaaagaagaaaaaacctaaaaaagatagtgta
ggatcaaaaagtaaaaaacaagaccctaatgctcctccccaaaacagaattcctctgcct
gaactgaaagactctgacaaactggataaagtaatgaatgtgaaggaagctgccagacgt
gtgcgtcttggcccagagtgcctgccctccatctgcttctacacattccttaatgcttac
cagggtctaactgcagtggatattacagatgactctagcatgattgtaggaggctttgct
gactctacagtaagagtgtggtctgtgactccgaaaaagctacgtagtgtgaaagctgca
gcagacctcagtctaatcgacaaagaatcagacgatgtcctggagaggatcatggatgag
aaaacagccagtgagttgaagattttgtatggtcacagtggacctgtctatggcaccagc
ttcagtcctgataggaactatctgttgtcctgttctgaagatggcacagtcagattgtgg
agtctccaaacattcacatgtttggtgggatataaaggacacaattatccagtatgggat
acacagttctcgccttacggatattactttgtgtcagggggacatgacagagtggctcga
ctgtgggcaacagatcactaccagcctttacggatatttgctggccatcttgctgatgtc
acatgtacccgatttcatcccaactctaactatattgccactggctcagcagacaggact
gtacggctctgggatgttctaaatgggaattgtgtaagaatattcactggacataaggga
ccaattcattcgttggcattttctcctaatggacgattcctggctactggagcaacagat
ggcagagttctgctgtgggatattggacatggcttgatggttggagaattgaaagggcac
actgacactatctatgcgcttcgattcagtagagatggggaaatcttagcatcaggttca
atggataacacagttcggctgtgggatgctgtgaaagcatttgaagatttagaaactgat
gactttactacagccactggacatataaacttgcctgaaaactctcaggacttattacta
ggtacatacatgaccaaatcaaccccagttgtacaccttcattttacccgcagaaacttg
ctactagctgcaggagcctacagttcacagtaa
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