Cygnus atratus (black swan): 118248805
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Entry
118248805 CDS
T09349
Symbol
SAMHD1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03250
Viral life cycle - HIV-1
cata04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
118248805 (SAMHD1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
118248805 (SAMHD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cata03400
]
118248805 (SAMHD1)
DNA repair and recombination proteins [BR:
cata03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
118248805 (SAMHD1)
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GFIT
Motif
Pfam:
HD
HD_assoc_2
PDEase_I
Pdc1_Ge1
SAM_2
Motif
Other DBs
NCBI-GeneID:
118248805
NCBI-ProteinID:
XP_035404022
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Position
16:15459331..15490394
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AA seq
614 aa
AA seq
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MGSPAAGWAAAPAKRARLQGSAEGPGGPVADGDPRLWDTERLCQHLSRSGVGEPSLLRRF
RESGVTGAMLLDLPACALEVTRVCLPAERLKVLACLNKLRQTVDVMKVFNDPVHGHIEMH
PLLVRIIDTPQFQRLRYIKQLGGTYFVFPGASHNRFEHSLGVGYLAGCLVRALKERQPEL
DITQRDILCVEIAGLCHDLGHGPFSHMFDGRFIPLAREGSKWKHETASVEMFEHLITSNR
LEEVMKSYGLVLEEDMTFIKEQIGGPIDENISEKSWPYRGRQKEKSFLYEIVANKKNGID
VDKWDYFARDCHHLGIQNNFDYRRLIKFTRVCEVENQKHICARDKEVGNLYDMFHTRNCL
HRRAYQHKIGNIIEIMITEAFQKADRFFEIEGSKGKLYRISTAMEDMEAYTKLTDNIYLE
ILHSSRPELNEAREILRKIERRELYKFLGETQPEKVNEIPKDEYDGLADDIANSKPEKNP
PNVDLKAEDFVVDVINMDYGMKDQNPIDNVLFYCKADPSKAVKISKEQVSRLLPRIFAEQ
VIRVYCKNLDPNIISAAKQYFVQWCIKRDFTKPQDGDVIAPHLTPMKQSWNNKSGDEFKT
ASEPSCKQRLSFNK
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgggcagcccggcggcgggctgggccgcggcccccgccaagcgcgcgcggctccagggc
tcggccgaggggcccggcggccccgtcgccgacggcgacccgcggctgtgggacacggag
cggctctgccagcacctctcgcgcagcggcgtgggcgagcccagcctgctgcgccgcttc
cgagagagcggcgtcaccggggccatgctgctggacctgcccgcctgcgccttggaggtc
acgcgcgtctgcctcccagctgagagattgaaggtgctcgcctgcctgaacaaactgaga
cagacagtggacgtaatgaaggtttttaatgatccagttcatgggcatattgaaatgcac
cctcttcttgttcgcatcattgacacacctcagtttcagcgcctgcgatacattaagcag
ctgggtggcacttactttgtttttccaggagcctctcacaaccgctttgaacactcttta
ggggtggggtacctagcaggatgcctggttcgtgcactgaaggagagacaaccagaattg
gatataacccaacgagacatcctctgtgtagaaattgcgggtctttgtcatgatttgggt
cacggaccgttttcacacatgtttgatggaagatttattccactcgctcgtgaaggttcg
aagtggaagcacgaaactgcttctgttgaaatgtttgagcacttaatcacatccaataga
ctagaagaagtcatgaagtcatatggtcttgtcctggaagaagatatgaccttcatcaag
gaacaaataggagggcctatagatgaaaacatttctgagaaatcgtggccctaccgtggt
cgacaaaaggagaagagtttcctgtatgagatagtagctaacaaaaaaaatggcattgat
gttgacaaatgggattattttgcaagggattgccatcacctaggaatccagaataatttt
gattataggcggttaattaaattcactcgtgtctgtgaagtagaaaaccagaagcatatc
tgtgcccgtgacaaggaagttggaaatttgtatgatatgttccacacacggaattgcctt
catcgacgagcataccagcataagattggcaacatcattgaaataatgattacagaagcc
tttcaaaaagcagaccgtttttttgaaatagaaggctctaaaggaaaattgtaccggatt
tctacagcaatggaagacatggaagcctacactaagctaactgataatatctacttggaa
attctgcactcaagtcgtccagaactgaacgaggcacgagaaattttgcgtaaaatagaa
cggcgtgaattatacaagtttctaggagagactcaacctgaaaaagtgaatgaaattcca
aaggatgaatatgatggtctggcagatgacatcgctaattccaagccagaaaagaatcct
ccaaacgtggatctaaaggctgaagactttgtagttgatgttatcaatatggattatgga
atgaaagatcagaatcccattgataatgttctcttctattgcaaggctgatccttccaag
gctgtcaagatcagtaaagaacaggtttcaaggcttttacccaggatatttgcagaacag
gttattcgggtttattgcaaaaatctggatccaaatatcatttcagctgcaaaacagtat
ttcgttcagtggtgtataaagagggatttcaccaaaccacaggatggtgatgtgattgcc
cctcatctaactccaatgaaacaaagctggaataacaaaagtggggatgaattcaagaca
gcttcagaaccgagttgcaagcaaaggctttctttcaataagtaa
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