Cygnus atratus (black swan): 118249067
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Entry
118249067 CDS
T09349
Symbol
USP42
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 42 isoform X2
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cata01002
]
118249067 (USP42)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cata04121
]
118249067 (USP42)
Enzymes [BR:
cata01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
118249067 (USP42)
Peptidases and inhibitors [BR:
cata01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
118249067 (USP42)
Ubiquitin system [BR:
cata04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
118249067 (USP42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
118249067
NCBI-ProteinID:
XP_035404560
LinkDB
All DBs
Position
15:7774567..7795475
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AA seq
1339 aa
AA seq
DB search
MTIVNKPKSSKSKKSSSRRSGKSKKPRTKKMKSRTANWGRIPPAEDSNQVSVAQGRGGAI
YCRSSEKSKPFAQRDLIINDGIAPPQRILFPPEKICMDWQQTQSVGVGLYNLGNTCFLNS
TLQCLTYTPPLANYMLSLEHNQSCREQGFCMMCTMETHINQALCCTVDAIKPTRVINDLR
RIGKHFRFGSQEDAHEFLRYTVDAMQKACLNGSTKLDRSSQATTIIHQIFGGFLRSRVKC
LNCKAVSDTYEAFLDITLDIKAVSSVTRALELFVKPEQLDGENCYKCSKCKKMVPASKRF
TIHRSSNVLTISLKRFANFTGGKINKEVKYPEYLDLRAYMSQSIGEPLLYALYAVLVHNG
INCHAGHYVCYIKAGNGLWYQMNDANVVRTDIKTVLGQQAYLLFYIRRYDLTLGERAFYL
PAPSYPRSFLGQRGANSKQAGFMGPRLPPHMIKNSSRLNGNGSLKEDPNTIGVTLKRPSS
APPTACVQNWAITRPSITDPSKKQKITISIHNKLPARQTVSQPDCLSSAVEDEDLNKAVP
SSTITNSTAAESTSNPSTMSVTTNVSKQEVSDEIFVEPAVNGNPKLSSDNTVPYGAESSG
KSEEESKGIFKRNCNVISSNGILVGKVVRTLQNSHSSCQNAEEERSQHELPKNDSLNGAI
SLVNESKENGLKLDDSTCQAEPVKPSEMFFSKTNGLLETMPIAMPPVPQEVMLESLTDSQ
LNSLSEEISVPGPQKSTENDALMETVVMEALLVYEESRKVPSDFSCEAENPFIQSDSETI
STKEEVGSIITKADNAHPSINGQHKIRERCFDTEDEFLEQYRSEDRGDKDKSRRSKEPEL
ISKENILYIKDSSEADENLRQTSSLKSDSECSSKNLSSLAVTDKCQDTKDISNNYVEVPP
VNDSSITKLDKVLESQFSRPNEEFGDRKWEEDAMHRKKDKKRIHETKKTDKEHYRRKREH
SDTEEKESQNRSKTDGHSSKRRCSRSVEVIKQNRHKQEHCEGSKYRSFHGERNSPDNGRR
SVKYSKYRSRSRGRSEQDRNRYYHSKGERTWSRERYYQDEPRRWEKCRYYNDYYSSHATG
DSRERKFSHGDKDFDKLSQAYNSRSHKDYHYKSRWPHSSLSREDDVHHFSSHRADLHRCS
VPQQHSEKYSRERHALPPVSGHFEDSPQKNEKERNRKRQYTRAEGSESEIERKRRKIEKE
LLGDEKMKKYKKFKKKKKSKDKHREKDYKLYDLDFSVLHFDNDNRKRKKKKKKKKHIRKL
KGFLEYLDPRFQKKTREKKEESRPPDGSFCEQYRNEGSKQPYKEGKPSTAGESKKYSSIA
SNEYIKDAELTDGSLQYSN
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atgaccatagttaacaagccaaaatcttcaaagtctaaaaaatcatcttcaaggcggtct
ggcaaatccaagaaaccacgtactaaaaaaatgaagtcacgcactgcaaactggggccgg
ataccacctgcagaagattctaaccaagtctctgtggcccaaggacgtggaggtgcaatt
tattgtagatcatctgaaaaatctaagccttttgcccaaagagatctaatcattaatgat
ggaattgctccgccgcaaagaattctttttccgcctgagaagatttgtatggattggcaa
caaacacaaagtgttggggttggactgtacaatcttggcaatacatgttttcttaattct
actctacaatgtttgacctacacacccccacttgccaattacatgctttctcttgagcac
aaccagtcatgtcgtgaacaaggtttttgcatgatgtgcacaatggagactcacattaac
caggccctgtgttgcactgttgatgccatcaagcctacacgtgttatcaatgatcttaga
cgaataggaaaacatttccgttttggcagtcaagaagatgcacacgaattcttgcgctat
actgttgatgctatgcagaaagcatgcttgaatggaagcaccaaattggacagatcttct
caagcaaccaccatcattcatcaaatatttggaggatttctaagatcaagagtaaagtgc
ttgaattgcaaagcagtttcggatacgtatgaggcatttcttgatatcactttggatata
aaggcagtttcatctgttaccagagctctagaactatttgtgaaacctgaacagctggat
ggagagaattgctataaatgtagcaagtgtaaaaagatggttcctgcatccaagagattt
actatacaccgttcttccaatgttctcacaatatcactgaaaagatttgcaaatttcaca
ggtggaaagatcaacaaggaggtaaaatacccagagtatttggaccttcgagcctacatg
tctcaatcaattggagaaccactcctctatgccttatatgcggtgctggtgcataatggt
atcaactgtcacgcgggacactatgtatgctacataaaggctggtaatggactttggtat
cagatgaatgatgctaatgtagtccgtactgacattaaaacagttcttggtcagcaagct
tatttacttttttatatcaggcgctatgatttgacactcggagaacgtgctttttactta
ccagcaccatcttatccccgttcattccttggtcagcggggggctaatagtaagcaggct
ggatttatgggaccacgacttcctcctcatatgattaagaattcaagtcgtttaaatgga
aatggatccttaaaagaggatccaaataccattggtgtcaccctaaaaaggccatcttca
gcaccaccgacggcttgtgttcaaaactgggcaattaccaggccttcaattactgaccca
tcaaaaaaacagaagatcactatcagtattcacaataaattgcctgctcgtcagactgtg
tcacagcctgactgtcttagcagtgctgtggaggatgaagatctcaacaaggctgttcct
tcatctacaattacaaattccaccgcagcagagtctacctcaaatccatctactatgtca
gttactactaatgtttccaaacaagaagtttctgatgaaattttcgtggagccagcagtg
aatggaaatcctaaactcagctctgataacacagtcccttacggtgcagaatcttcagga
aaatctgaggaggagtcgaagggcatatttaaaaggaattgcaatgtaatatcctctaat
ggaattttggttggaaaggtagtccgtacattgcagaattcccattcttcctgtcagaat
gctgaagaagaaagatcccagcatgagctgccaaaaaatgattcactaaatggtgctatt
agtttagttaatgaatctaaagaaaacggactgaaacttgatgattccacttgccaagct
gaacctgttaaaccttctgagatgttcttttctaaaacaaatggattgcttgaaacaatg
cctatagctatgcctccagtccctcaagaagtaatgttagaatccctcacagacagccag
ctgaacagcttgtcagaggaaataagtgtcccaggacctcagaaatctacagagaatgat
gctcttatggaaactgtagtgatggaagcactattggtctatgaagaatccaggaaagtt
ccttctgacttcagctgtgaggctgagaatccttttattcaatcagattctgaaaccatt
tctaccaaagaagaagttggaagtattataacaaaagctgataatgcacatcccagtatc
aatggtcagcacaagattagggaaagatgctttgatactgaagatgaattccttgaacag
taccgatctgaggaccgtggagacaaagacaaatcaagaagatcaaaagaacctgaactc
atttcaaaagaaaatattttgtacatcaaagactcttctgaggctgatgagaacttgcgg
caaacttcctctctaaagtcggacagtgaatgtagttctaaaaatctttcctccttagct
gttacagataaatgccaagatacaaaggacatatctaataactatgtagaggtaccacct
gttaatgactcgtctattacaaagctggataaagttttggaaagccaattctccagacca
aatgaagaatttggtgacagaaaatgggaagaagacgccatgcacaggaaaaaagataag
aaaaggatacacgaaactaaaaaaactgacaaagagcattaccgaagaaagagggaacat
tctgatactgaagagaaggagagtcaaaacagaagcaaaacagatggtcattccagcaag
agaaggtgctctcgcagcgtggaagttattaagcaaaatcgtcataagcaggagcattgt
gagggaagcaagtacagatctttccatggtgaaagaaacagccctgataatgggagaaga
tcagtaaaatattcaaagtacagatctcgaagcagaggaagatcagaacaagataggaat
agatattaccattccaaaggggaaagaacttggagcagagaaagatactatcaagatgaa
ccacggagatgggaaaaatgtagatattacaatgattactattcatctcatgcaacagga
gacagtagagagagaaagttctctcacggtgataaagactttgacaaattgagtcaagct
tacaacagcaggtcacataaggattatcattacaaaagcagatggcctcacagttccctc
tcgagagaagatgatgtacatcactttagcagccacagagcagacttacatcgttgctca
gtacctcagcaacattctgaaaaatattctcgtgaaagacatgcacttccacctgtgtca
ggtcattttgaggactctccccagaaaaatgaaaaagaaagaaacagaaaaagacaatat
actcgtgcagaaggtagtgaaagtgaaatagaaaggaaacgcagaaagatagaaaaggag
cttttaggtgatgaaaaaatgaaaaaatataagaagttcaagaagaaaaagaagtctaaa
gataaacatcgagagaaggattacaaactttatgatttggatttctctgtgctccacttt
gacaatgacaatcgcaagcgtaagaaaaagaagaaaaagaagaaacacatcaggaaactg
aaaggcttcttggaatacttagatcctcgtttccagaagaaaacacgggagaagaaggaa
gaatcccgtcctccagatggctctttttgtgagcaatacagaaatgagggcagtaaacaa
ccttataaggaagggaagccttccactgcaggtgaaagcaagaaatacagctccattgca
tccaacgagtatattaaagacgcagagcttactgatggaagccttcagtactcaaactaa
DBGET
integrated database retrieval system
