Cygnus atratus (black swan): 118249182
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Entry
118249182 CDS
T09349
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118249182 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cata03019
]
118249182 (PARN)
Enzymes [BR:
cata01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
118249182 (PARN)
Messenger RNA biogenesis [BR:
cata03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
118249182 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
T6PP_C
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
118249182
NCBI-ProteinID:
XP_035404791
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All DBs
Position
15:17807479..17869278
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AA seq
636 aa
AA seq
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MEVIRSNFKDSLSKVCEAIEEADFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDHTEEKYIMKSFNFYIFPKPFNRSSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYISPNTTKCPVTIPEDQKKF
IEKVVEQIEELLKNEENESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIV
ISKVDDEERKRREQQKQAKEQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQF
YCPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPFKEIINNTSLAELEKRLKEVPFSPPKV
ESAEGFPSYDTSSEQLHEAGYDAYITGLCFISMANFLGSFLSPPKNHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVEKKHEEKQAKRKCTEDSWKEMERKRLK
TQCTPYVSQSRYYCVNSFTGTSTVGKRSMSPIQEEAGSDDMEEGEDPEYNQTDSCAEPLP
DSKKRAKKFKKIKKEQVPAGSFTSSSNEIFEVPETW
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgatcagaagcaattttaaggatagcctgagcaaagtctgtgaagccatcgaa
gaggcggacttcctggccattgatggggagttttcagggatcagcgatgggccttctgtt
agtgcattaaccaatggctttgacactccagaagaaaggtatcagaaacttaaaaagcat
tccatggattttttgctctttcagttcggcctttgcacttttaaatatgaccacacagaa
gagaagtatataatgaagtcatttaatttctatatttttccaaaaccctttaacagaagt
tcaccagatgtcaagtttgtctgtcagagttcaagtatagattttttagcaaaccaagga
tttgattttaataaagtttttcgcaacggaattccgtatttaaatcaggaagaagaaaga
cagctaagggaacagtatgatgaaaaacgttctcaggccaatggtgcaggatctctctcc
tatatttctcccaataccacaaaatgtcctgtcacaattcctgaagatcagaaaaaattc
attgagaaagtagtggaacagatagaagaattgttaaagaatgaagaaaatgaaagtttg
gaactggagccatgtacaggttttcagaggaaattaatttatcagaccttgagctggaag
tatccaaaaggtatccacgttgaaactctggagtcggataagaaggagagatatattgtt
attagcaaggtagatgatgaagaacgaaaaagaagagaacagcagaaacaagcaaaggaa
caggaagaactgaatgatgcggtaggattttccagagttgttcatgctattgcaaattct
ggcaagcttgttattgggcacaacatgctgcttgatgttatgcatactatacaccagttc
tattgtcctcttcctgatgacctaagtgagttcaaagaagtaacatcatgtgtctttccc
cggctattggatactaaactgatggcgagtacacaaccttttaaggagatcattaataat
acatcccttgcagaactggaaaagcgtttaaaagaagttccattcagtcctcctaaagtt
gaaagtgcagaagggtttccaagttatgatacctcttctgaacagcttcatgaagcagga
tatgatgcttacattactggactgtgcttcatctccatggctaatttcctaggttcgttc
ctcagtcctccaaaaaatcacgtgtctgctagatcaaaactcatagaacctttttttaac
aagctatttcttatgagagtaatggacattccatatctgaatttggaaggaccagacttg
cagcctaaacgagatcatgttcttcatgttacttttcccaaagagtggaagacgagtgac
ctttaccagctttttagtgcctttggtaacattcaggtgtcgtggattgatgacacatca
gcatttgtatcattaagccagccagaacaagtacaaatagctgtaaacaccagcaggtat
gctgaaagttataggatccagacatatgctgaatatgttgagaaaaaacatgaagaaaaa
caggcaaagagaaaatgtacagaagatagttggaaggagatggagagaaagcggttaaaa
actcaatgcacaccttacgtttcccagagtcgatactactgtgttaacagttttacaggt
accagtacagtgggaaagagaagcatgagtcctattcaggaagaagctggttctgatgat
atggaagagggagaagatccagagtacaaccagacagactcctgtgcagagcccctgcca
gatagtaagaagagagccaaaaagttcaaaaagatcaagaaagaacaagttccagcagga
agcttcacaagtagttccaatgaaatttttgaagtccctgaaacatggtag
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