Cygnus atratus (black swan): 118249216
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Entry
118249216 CDS
T09349
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
cata
Cygnus atratus (black swan)
Pathway
cata05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
118249216 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cata01001
]
118249216 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cata04054
]
118249216 (CIITA)
Enzymes [BR:
cata01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
118249216 (CIITA)
Protein kinases [BR:
cata01001
]
Serine/threonine kinases: Other
TAF1 family
118249216 (CIITA)
Pattern recognition receptors [BR:
cata04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
118249216 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_8
NB-ARC
LRR_14
LRR_9
RsgA_GTPase
nSTAND_NTPase5
NPHP3_N
AAA
Motif
Other DBs
NCBI-GeneID:
118249216
NCBI-ProteinID:
XP_035404846
LinkDB
All DBs
Position
15:17250055..17280471
Genome browser
AA seq
1214 aa
AA seq
DB search
MNLFKEILPKIRKILSGATASDDHALLNLMLKEHVISKEYHQALLHEKDREDLARKISLT
FVEKWDLYWNTLIPHSCLNLCGSRPQNITDNEPTGTKHMSDSKRQIMDSALVCENGYLDL
LHSDIDPVHLFTLLDPKSSGNEEGDLFADSEIDANSYDQLNSMDFLCTVENDENGDELYL
SSNAREAYARIAELAEYVLKDQQEKQVEDTFAGSLILDEMTAENAEIFTDVKMQKCHKRT
FLGSVESCADVSEPKYKKIVDAPAVSTRNGSFLAMPLNSHPASSTSLTHQHMSFSVPAIN
ALGRSFVIPVSGSSAPLIPECLPIGLDKQENIDFADPAQQKNSFLIGNATSSIIAYPALT
TSTETMVSPSFPVNACGLEMFKEVQVPVIPSEEPFKRPRSVEVFCTALKDYFGDICKSVA
MEREVTLDHLFIDGTLVQNQIETKTGKNSVKAMEKELVTYSLQWKEKASLERSQIFQIPG
GKDLETKVIVVLGKAGMGKSILVQKICQDWSNGEFPQFEFLFWFDCKQISLPEKCYSLKD
LLLDFFVKPQEGSKEIFEYILQNPAKVLLVFDGFEGLHDHENFSRCSNRQPDKDLYSIKE
LLSGLIQKKILNGCTLLLTARPKDKVNQYVSKVDKTIEIVGFSPQQRELYITKYFEGLPY
CDNALKLIKESEYLFSHCYSPVMCRFVCFLCETVLEMGDKGLPSTLTTLFLKFVQQKIIP
MQTDITAVQNQKSLATLARIAWYLGEKHQSTMKSDLLPSKEVKEFALKYGFFLPFAFPKH
SDTEEEEFGTTFSDFIIQNFLGALHLILAEDVKDKSLTKYLSFPSKKKKSYNWLDLLPRF
LAGLLFLQDDAYFCSLSNKEIKQSTKKQKTLLKYIRRLQINDLCPERLLELLHCVYETQY
NYLLQHVTLRLKPDLSFQGIVITPPDVHVLYSTLKRSRKEFSLDLQNSSIDMQGLKDLVG
LKNVASFRASLGDTIRLWKYLEQTKDYELLKLSTEKFVLDPLKAKTMKDINDLSDLVEMQ
EMINCMQDASGCSSYEIPAIKNLRKIEFALGPAYGLQGFLKLVEILPSFPTLQHLDLDAL
SENGIGDEGAKSLSEVFPTLRSLEILNLSQNKITDAGAEKLATALPSLSSLTTLSLYNNN
ICDFGAENLAEVLPAMASLRVLDVQYNKITGVGAQQLTDSLRKCPHIKNLLMWNPTIPYG
VLEHLQQLDSRISM
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgaatctttttaaggagatcctgcccaaaataaggaagattctttcaggtgctacagct
tctgatgaccatgcattgcttaacctcatgctgaaagaacatgtgatatccaaggagtac
catcaggccttgctccatgaaaaagacagagaggaccttgcaaggaagatttctctgaca
tttgtggagaaatgggacctgtattggaatactttgattccccactcttgtttaaacctc
tgtggcagtagacctcaaaacattacagataatgagccaacaggaaccaagcacatgtct
gacagcaagagacaaatcatggattcagcattggtgtgtgaaaatggctatcttgatttg
ctgcacagtgacatcgatccagtgcatctgtttactctcttagaccctaagtcatctgga
aatgaagagggtgacttgtttgcagattctgaaattgatgccaacagctatgatcagttg
aatagtatggatttcctgtgtacagtggaaaatgatgaaaatggggatgaattatatctc
tcttccaatgccagagaagcttatgctagaatagctgaattagcagaatatgtgctcaaa
gatcagcaagagaagcaggtggaagacacttttgcagggagccttattttggatgaaatg
actgctgaaaacgctgagatatttactgatgtaaagatgcagaaatgtcacaaaagaaca
tttttaggctccgtagagagttgtgctgatgtttcagaacccaaatacaagaaaattgtg
gatgcccctgcagtgtctacaaggaatggcagtttcttggctatgcctctcaacagccat
ccagctagctccacctcgctaactcaccagcacatgtccttttctgttcccgctatcaat
gcactgggaagaagttttgtaattcctgtttcaggatcttcagcacctttgattccagag
tgtctacccattggcttggacaaacaagagaatatagactttgcagatcctgctcagcag
aaaaacagttttttaattggaaatgccacatcaagtattatagcatacccagcactgact
acctccactgaaacaatggtttccccaagttttccagttaatgcatgtggcttagaaatg
ttcaaagaagtccaagttcctgtaattccttctgaagaacctttcaaaagaccaaggtca
gtggaagttttctgtacagcgcttaaggattacttcggagacatatgcaaatctgtggcc
atggagcgtgaagtgactcttgatcacttgtttattgatggtacactcgtgcaaaaccaa
attgaaaccaagactgggaagaacagtgtaaaagcaatggaaaaggagctggtaacttac
agtctacaatggaaggaaaaggcatcacttgaaagaagccaaatatttcaaatcccagga
ggtaaagatttagagactaaagtgattgtggtgttgggaaaagcaggaatgggcaaaagc
attcttgtacagaagatctgccaggactggtccaatggagagtttcctcagtttgaattt
cttttttggtttgactgcaaacaaataagcttgcctgagaagtgttacagcttgaaggat
ctgcttcttgatttttttgtaaaacctcaagagggaagcaaagagatctttgagtacata
ttgcaaaatcctgctaaagtccttctggtttttgatggttttgaagggttgcatgaccat
gagaatttttctcgttgctcaaacagacagcctgacaaagacttgtacagtataaaggag
ctgctttcaggacttatccaaaaaaagatactcaatggctgtactttattacttacagca
agaccgaaagacaaggtgaaccagtacgtgtccaaagtggataagactattgaaatagta
ggattctctcctcagcagagagaattgtacataaccaaatactttgaaggattaccctac
tgtgataatgcactgaaattaatcaaagagagtgagtacctgtttagtcattgttacagc
cctgttatgtgtagatttgtttgttttctctgtgagacagtacttgaaatgggagacaaa
ggccttccttcaactcttactacacttttcctgaaatttgttcagcaaaagataatacct
atgcaaacagatattacagctgtgcaaaatcaaaagagccttgctacactagcccgtata
gcctggtatcttggagaaaagcaccaaagtaccatgaaaagtgatcttcttccttctaag
gaagttaaagaatttgctctgaagtatggatttttcctgccatttgcattccccaaacat
tcagatactgaggaggaggaatttgggaccacattctccgatttcatcattcagaatttc
ttaggtgcgcttcaccttatattagcagaagacgtgaaggataaaagtctaacaaagtac
ctgtcttttccatccaagaagaaaaagtcttataactggttagatttactgcctcgattt
ttggctggattgttgttcctccaggatgatgcctacttctgctccctttctaataaggaa
ataaaacaatcgaccaagaagcagaaaacgctcctgaaatatattagaaggttgcagata
aatgacctctgtccagagaggttactcgagcttttacactgcgtatatgaaacacaatac
aattatcttttgcagcatgtgaccttaaggctcaagccagacctgtcttttcagggcatt
gttattacaccaccagatgttcatgtactgtactctactttaaaaaggtcaagaaaagag
ttttccttggatttgcaaaacagcagcattgacatgcaagggctaaaagacttggttggc
ctgaagaatgtggcatcattcagggcctcccttggtgatacaatcaggctatggaaatac
ttagaacagacaaaagactatgaactgttgaaactgtcaacagaaaaatttgttctcgat
cccttaaaggcaaagacaatgaaggacatcaatgacctttcagaccttgtagaaatgcag
gagatgatcaattgcatgcaagatgcctctggttgcagcagctatgaaattcctgccata
aagaacctgagaaaaatagagtttgctctaggtccagcatacggccttcagggatttcta
aaacttgtggaaattctgccatcatttccaacacttcagcatttagaccttgatgctctg
agtgaaaatggcataggagatgaaggagcaaagagtctatctgaagtctttccaacactg
agatcactggaaatattgaacttatcacagaataagataacagatgcgggtgcagagaaa
ctagctacagctcttccttccttatcttcattaacaacactaagcttgtacaataataac
atttgtgattttggagcagaaaatcttgcagaagttcttcctgcaatggcatctttaaga
gtgctagatgttcagtataacaaaataactggtgttggagcccaacagctgactgacagc
ctacgaaaatgcccccacataaaaaacttgctgatgtggaatcctacaattccctatgga
gttctcgaacaccttcagcagctggactcgaggatcagcatgtag
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integrated database retrieval system
