Cygnus atratus (black swan): 118249666
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Entry
118249666 CDS
T09349
Symbol
TRIM71
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cata03019
]
118249666 (TRIM71)
04121 Ubiquitin system [BR:
cata04121
]
118249666 (TRIM71)
Enzymes [BR:
cata01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118249666 (TRIM71)
Messenger RNA biogenesis [BR:
cata03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118249666 (TRIM71)
Ubiquitin system [BR:
cata04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
118249666 (TRIM71)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
SGL
ANCHR-like_BBOX
zf-RING_5
zf-C3HC4
zf-RING_UBOX
DUF4094
Motif
Other DBs
NCBI-GeneID:
118249666
NCBI-ProteinID:
XP_035405737
LinkDB
All DBs
Position
2:complement(43994531..44049194)
Genome browser
AA seq
893 aa
AA seq
DB search
MASFPESDFQICPLCKEMCGSPAPLSSNSSTSSSSSQTSSSSGGGGGGGGSSCGGPPRRL
HVLPCLHAFCRQCLEAQRHPGAGDALKLRCPICDQKVVISEPSGMDALPSSNFLLSNLLD
VVVVAAAADEHKNGRPAGTGPAAGSAPGVGGGNNRHHGRPPPHRAAAPGSSPAAASSSSS
SSSSAAPSSTSSSSSGGGSSAALLLRRPHSRQGEPRCSSCDEGNAASSRCLDCQEHLCDN
CVRAHQRVRLTKDHFIERFAAGPPPSAAAAAAAGPAAPLALSPPYPASPYNILSVFPDRA
SYCQHHDDEVLHFYCDTCSVPICRECTMGRHVGHSFIYLQDALQDSRTLTIQLLADAQQG
RQAIQLSIEQAQAVAEQVEMKAKVVQSEVKAVTTRHKKALEERECELLWKVEKIRQVKAK
SLYLQVEKLRQNLNKLDNTISAVQQVLEEGRTMDILLARDRMLAQVQELKNVRGLLQPQE
DDRIMFTPPDQALYMAIKSMGFVSSGAFAPLTKATGEGLKRALQGKVASFTVIGYDHDGE
PRLSGGDMISAVVMGPDGNLFGADVSDQQNGTYLVSYRPQLEGEHLVSVMMCNQHIENSP
FKVMVKSGRSYIGIGLPGLSFGSEGDSDGKLCRPWGVSVDKEGYIIVADRSNNRIQVFKP
CGTFHHKFGTLGSRPGQFDRPAGVACDISRRIVVADKDNHRIQIFTFEGQFILKFGEKGT
KNGQFNYPWDVAVNAEGKILVSDTRNHRVQLFGPDGAFLNKYGFEGALWKHFDSPRGVTF
NHEGHLVVTDFNNHRLLVIHADCQSARFLGSEGSGNGQFLRPQGVAVDQEGRIIVADSRN
HRVQIFESNGSFLCKFGTQGSGFGQMDRPSGIAVTPDGMIVVVDFGNNRILVF
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgttcccggagtccgacttccagatctgcccgctgtgcaaggagatgtgcggc
tcgccggctcccctctcctccaactcctccacgtcgtcgtcctcctcgcagacctccagc
tcctccggggggggcggcggcggcggcggctcgtcctgcgggggccctccgcggcggctg
cacgtcctgccctgcctgcacgccttctgccgccagtgcctggaggcgcagcggcacccc
ggcgcgggggacgcgctcaagctgcgctgccccatctgcgaccagaaggtggtgatctcg
gagccgtcgggcatggacgcgctgccctcctccaacttcctcctcagcaacctgctggac
gtcgtggtggtggcggcggccgccgacgagcacaagaacgggcgccccgccggcaccggg
cccgccgccgggtcggcaccgggggtgggcggcggcaacaaccggcaccacggccgcccc
ccgccgcaccgagccgccgcgccgggctcctctcctgccgccgcctcctcctcgtcctcc
tcctcgtcctccgccgcgccttcctcgacgtcctcctcctcgtcgggcggcggctcctcg
gccgcgctcctgctgcggcggccgcacagccggcagggcgagccgcgctgcagctcctgc
gacgagggcaacgctgccagctcccgctgcctcgactgccaggagcacctgtgcgacaac
tgcgtgcgggcgcaccagcgggtccgcctcaccaaggaccacttcatcgagcgcttcgcc
gccgggccgcccccctccgccgccgccgctgctgccgccgggccggccgcgccgcttgcc
ctcagcccgccctaccccgcctcgccctacaacatcctctccgtcttccccgaccgggcc
agctactgccagcaccacgacgacgaggtactgcatttctactgtgatacttgctctgtc
cccatatgtcgggaatgtaccatgggacgacacgtgggtcacagctttatctacctccaa
gatgctcttcaggactccaggactcttactatccagctcctggcagatgctcagcaagga
cgacaggctattcagttgagtattgaacaggcccaggcggtggcagagcaagttgagatg
aaagctaaggtggtacagtctgaagttaaagcagtgacaactagacacaagaaggccttg
gaagagcgggagtgtgagctgctctggaaggtggaaaagattcgtcaagtcaaggctaag
tcactctacctgcaagttgaaaagttacgtcagaacctaaataagctggacaacacaatt
agtgctgttcagcaggtcctggaggaaggtcgtaccatggatattcttctggcccgggac
cgtatgctggctcaggtgcaggagctgaagaatgtgaggggccttctccagccacaggag
gatgacaggatcatgttcacgccccctgaccaggccttgtatatggccattaaatcaatg
ggctttgttagcagtggggcttttgctcctctgaccaaagccactggggaaggcctcaag
cgtgcactgcagggcaaagtagcctctttcacagtgataggctatgaccacgatggtgag
cctcgcctttcaggaggtgacatgatctctgcagtggtgatgggtccagatggaaacctt
tttggggcagatgtcagtgatcaacagaatgggacctacctggtcagctaccgtccacag
ctagagggagagcatctggtatccgtgatgatgtgcaaccaacacattgagaacagtccc
ttcaaagtcatggtgaaatctgggcgcagctacataggtattgggctacctgggctctcg
tttggcagtgagggagatagcgatggcaaactctgccgcccctggggggttagtgtagac
aaagaaggctacatcattgtggctgaccgcagcaataaccgcatccaggtgttcaaaccg
tgcgggacttttcaccacaagtttggcacgctgggctcccggcctggccagttcgatcgg
cctgctggtgtggcctgtgacatctcacgtaggatcgtcgtggctgacaaggacaatcat
cgcatccagatcttcacattcgaagggcagttcattctgaagtttggggagaaaggaaca
aagaatgggcaattcaattacccatgggatgtggctgtcaatgcagagggcaagatcctg
gtctctgacacaaggaaccatcgcgttcagctgtttgggcctgatggtgcatttcttaac
aagtatggctttgaaggggcactctggaagcactttgattcccccagaggtgtgactttc
aatcacgagggccacttggtcgtgacagacttcaacaaccatcgcctcctggtcatccat
gcagattgccagtcagcacgctttctgggctcagagggcagcgggaacggccagttcctg
cgcccgcagggagtggcggtggatcaagaggggcgcatcattgtggccgattccaggaac
caccgggtgcagatatttgagtcaaatggtagctttttatgcaagtttggcactcaggga
agcggctttggtcagatggaccgtccttcaggtatagccgtcacccctgatggcatgatt
gttgtggtcgactttggaaacaatcgaattctcgtcttctaa
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