Cygnus atratus (black swan): 118249716
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Entry
118249716 CDS
T09349
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
118249716 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cata03032
]
118249716 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
cata03400
]
118249716 (TOPBP1)
DNA replication proteins [BR:
cata03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
118249716 (TOPBP1)
DNA repair and recombination proteins [BR:
cata03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
118249716 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
118249716
NCBI-ProteinID:
XP_035405848
LinkDB
All DBs
Position
2:complement(46275164..46297658)
Genome browser
AA seq
1522 aa
AA seq
DB search
MTGGKEPFCVRFVRSPGSSGCFWKALESIKEFQSEEHLQILEEETALNIKGNDKSLYICD
PFRGDVFNHLKKLGCRIVGPQVVLYCMQSQQCVPRAEYPVYNMTMADVTISCTSLEKDVR
EEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAASLKKPILLPSWVKTLWDKSQQ
SMMRYTDVNMEDYTCPIFLGCTICVTGLSSSDRKEVQRLTAEHGGQYTGQLKMNECTHLI
VQEPKGQKYECAKKWNVHCVSVQWFSDSIEKGFCQDETMYKIEGRSKLSNTPSTSTPTSH
ASKPDTHNFSDVSHISNINFSGVNETACSSAMSSRLDLPPDELENLDISSFQAPEDLLDG
CRIYLCGFSGRKLDKMRRLINCGGGVRFDQLNEDVTHVILGENNNELKHFLDKTLHRPHV
VTAKWLLESFTKGYLCPVEQYIPLNYQPLENPILEQPGVKSIFPKNNNLLKKETVNVIKH
QRAAEDDFLSQYLNNDSALAEAEKLTSGSFNDVTHVTVQEENNSSVCNGSLGEPSALVEG
GLFARKRFLLLGFGEEDESCVADIIKENAGKIVPPQSRTIADYAVVPLLGCSVKSTVGDV
VTNTWLVTCVEEQVLLDPLSNPLFTPVPVMEGVTPLVDCVLSFSQFTGAERDSLAYLAGL
LGARVQEFFVRKANAKKGMFASTHLVVKEPNGSKYEAAKKWNLPAVTVAWLLQSARTGKR
ADESKFLVENADAEDKESSITQLNDKTPATIKSPDSPERPTYLLEAGKKAPVTPLDINRF
QSKAFQAVISHHIGKTTSPHAQGGLPQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALAAL
ETPGGLGQKSRKLSTPLSEVIGRNLKLALANSTRNTEAFTASPQLKAAQPEAEEEPKPLA
DVVICVSKKLSKKQSELNAVAASLGAEYRWCFDESVTHFIYKGGQNDNNKEYRSVKERGI
HIVSEHWLLESAQEYKRLPESLFPHTYNPKMSLDISAVQDVRLSSSGKLPSTGKPAEENE
IIPVDEDDAEDDVTTDQIKETVCTGEEQIVTSESKGVLTQALEMRENFQRQLQEIMSATS
IVKPQGQRGSLSRSSFDGSPTTPDSTRSMRNGRSRVLEALRQSRQALTDINTEPSQSEQI
IWDDPTAREERARLVSNFQWPNSPSQYPEQVQSNVNKNMDESAFKGSIGDSEIAGIAVPE
AEDGDLMEGVKNPVHRDPETPIKDNLIPTPQAPSIAFPLANPAVAPQPKEKAVTEDEKAD
EEPEKHRKFQLSSLNPQERFDYCHLIEELGGIVLEKQCFDPSCTHIIVGHPLRNEKFLAS
MAAGKWVLHRSYLEACRGAGRFVQEEDYEWGNNSILNVLSGINVNQKKLALAAMRWRKKI
HKGRQETGTAEGAFSGWKVILNVDQTKEAGFRRLLQSGGAKVFSGHSATFFKEATHLFAD
FSKLKPDDSRVNVAEAAAQGVNCLKPEYIADYLIQEPPPPMESYCLPEAESYVQNNKELG
TGLSQKRKAPGEMSRVKRSRIR
NT seq
4569 nt
NT seq
+upstream
nt +downstream
nt
atgacaggaggcaaggagccgttttgcgtgaggttcgtcaggtctcccggcagctcgggg
tgcttttggaaagctctcgagtctataaaagaatttcagtcagaagaacacctccagatc
cttgaagaagaaacagcactcaacataaaaggaaacgataaatccctttatatttgtgat
ccttttagaggcgatgttttcaatcatctcaaaaagcttggctgtagaattgttggacca
caggtggtcctgtactgtatgcagtcccagcagtgtgtcccaagagcggagtatcctgtg
tacaacatgaccatggccgacgtaacaatatcctgtaccagccttgaaaaagatgttagg
gaagaagttcataaatatgtgcagatgatgggtggacgtgtgtacagagacctcaacgtg
tcagtaactcatcttatagctggagaagttggcagcaagaaatacttagtagctgcatct
ctgaaaaaacctattctgcttccctcttgggttaagacactgtgggataaatctcagcaa
agcatgatgagatataccgatgttaacatggaagactacacttgtcctatatttcttggc
tgtacaatttgtgtaactggcttaagtagctcggaccgcaaggaagtccagcgcctcaca
gctgaacatggcgggcaatacacgggacagctcaagatgaatgaatgtactcacctcata
gttcaagagccaaaaggtcagaagtatgaatgtgccaaaaaatggaatgtgcattgtgtg
tccgtgcagtggttttctgacagtattgagaaaggtttctgtcaggatgagacaatgtat
aaaatagaaggcagatcaaaattaagtaacacacccagtacctcaacgcctacaagtcat
gccagcaaacctgacactcataacttttcggacgtcagccacatttccaatatcaatttc
agcggtgttaatgaaactgcttgtagttctgctatgagcagcagactggatcttcctcct
gatgagctggaaaacttggacataagttcttttcaagcccctgaagatttattagatggc
tgtcgaatctatctatgtggcttcagcggcaggaagttggacaagatgagaagacttatt
aactgcggtggtggtgttcgatttgatcagcttaatgaagatgttacccatgtcattctg
ggggaaaataataatgaactgaaacacttcttggacaagacacttcacaggcctcatgta
gtgacagcaaaatggttgctggagtcatttactaaaggttatctgtgtccagtggagcaa
tatatccctctcaactaccagccgttagagaatccgattttggagcaacctggtgtgaag
tcaatttttcccaaaaacaacaatcttttgaagaaagaaactgtgaatgttataaagcac
cagcgagctgcagaagatgacttcttgtctcaatatctaaataatgattctgcgttagct
gaagctgagaaacttacatctggtagctttaatgatgttactcacgtgactgttcaagaa
gagaataattcttctgtctgtaatggttctttgggagagccttctgcactggttgaagga
ggcttatttgccagaaagagatttcttcttctgggttttggtgaagaagatgagtcctgc
gttgcagatattataaaggagaatgctgggaaaattgtgccaccgcaaagcagaaccatt
gcggactatgctgtggtgcctttattgggatgttctgtgaagtcaaccgttggtgatgtt
gtcaccaatacgtggctggtaacatgtgtggaagagcaggtccttttagatcctctttcc
aatccacttttcacaccagtcccagtaatggaaggagttactcccttggtggactgtgtt
ctttcttttagccagttcactggtgcagagagagattctctagcttatctggcaggactg
ctaggagcaagagtccaggaattctttgtgcgaaaagccaatgcaaaaaaggggatgttt
gccagcacacatctcgtggtgaaagagccaaatggttccaagtacgaggctgcaaagaaa
tggaatttgcctgcagtcaccgtagcttggcttttgcagtctgcaaggacaggaaagaga
gcagatgagagcaagttcttggttgaaaatgcagatgctgaagataaggagagttccatt
actcaacttaatgacaagacaccagcaactattaaatctcctgattctccagaacgacct
acttatctgcttgaagctggaaaaaaagcacctgtgacccctcttgatatcaacaggttc
cagagtaaagctttccaagctgtgatctctcatcacattgggaagaccacaagccctcat
gcacaagggggactgccacaaaaagaaccatctttacaccttgacacaccatcaaagttt
ctttccaaagacaagctattcaagccttcttttgatgtaaaggatgctctggcggctttg
gaaactccaggaggtcttggtcaaaaaagcaggaagctgagcacacctctctctgaagtc
attggcaggaacttgaaattggcactggcaaacagcacgcggaatacagaagcttttact
gccagccctcagttgaaggctgcacagccagaagcggaagaagagcccaagcctctagct
gatgttgttatctgtgttagtaaaaagcttagtaagaagcaaagtgaactgaatgcggta
gcagcttctcttggcgcagagtacaggtggtgttttgatgaatcagtaacacacttcatc
tacaagggagggcaaaatgataacaacaaggagtatagatctgttaaagaacggggaata
catattgtttcggaacactggcttttagagagtgcccaagaatataaacggcttcctgaa
tctctctttcctcacacctacaatcccaaaatgagtctggacatcagtgcagtgcaggat
gtcaggctttcctcctcgggtaagcttccatcaactggaaaaccagcagaagaaaatgag
attattccagtggatgaagatgatgctgaggatgatgtcactactgaccaaataaaggaa
acagtttgtacaggagaagaacaaattgtaacaagtgaatccaaaggagttttgacccaa
gcactagaaatgagggagaacttccagaggcagctgcaggagatcatgtctgccacatca
atagtgaaaccacaaggacaaagaggatccctttcgaggagcagtttcgatggttctcca
actactcctgacagcacacggtctatgcgaaatggccgcagtagggttttggaagctcta
aggcagtcccgtcaagcacttacagatataaacacagagccttcccagagtgagcagatc
atctgggatgatcctactgcaagggaagagagagcgagacttgtcagcaactttcagtgg
cctaacagtccttcccagtacccagagcaagttcagagtaacgtcaataagaacatggat
gagtctgccttcaaaggatccataggtgattcagagattgctggtatagctgttcctgag
gctgaggatggagatttaatggaaggtgtaaagaatcctgtacacagagatcctgaaaca
cccattaaagataacctgatccccactccacaggctcccagcattgctttccccctggct
aaccctgctgtggcaccccagcccaaagaaaaggccgtcacagaagatgagaaggctgat
gaagaaccagaaaaacaccgtaaatttcagctgtcttctcttaatccacaagaaagattt
gattactgccacctgattgaggaattaggtggaatagtacttgagaagcagtgctttgat
ccaagttgcacacacatcatcgtgggccatcctcttcgaaatgaaaaattcctggcctcg
atggcagctgggaagtgggtgcttcatcgttcctacctggaggcatgtcgaggagctggc
cgctttgtgcaggaagaagattatgagtggggaaataattccatacttaatgttttgtct
ggaatcaatgtaaaccagaagaagctagcactcgcggccatgagatggaggaaaaaaatt
cataaaggaaggcaagaaactggtactgctgagggagccttcagtggctggaaagtgatc
ctgaatgttgatcagaccaaggaagcaggattccgacgccttcttcagtcaggaggagca
aaagtgttttctggtcactctgcaactttcttcaaagaagcgactcatctctttgctgac
ttcagtaagctgaagccagacgactcccgggtgaacgtagctgaggcagcagcccaggga
gtgaactgcttgaagccagagtacatcgccgactacctcatccaggagccacctcccccc
atggagtcttactgcctgccagaagctgaatcttatgttcagaacaacaaagaacttggg
actggattatcccagaaaagaaaagcaccgggggaaatgagcagagtcaagcgatccagg
atacgctga
DBGET
integrated database retrieval system
