Cygnus atratus (black swan): 118249737
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Entry
118249737 CDS
T09349
Symbol
CSTF3
Name
(RefSeq) cleavage stimulation factor subunit 3
KO
K14408
cleavage stimulation factor subunit 3
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118249737 (CSTF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cata03019
]
118249737 (CSTF3)
Messenger RNA biogenesis [BR:
cata03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
118249737 (CSTF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
NRDE-2
TPR_16
TPR_19
TPR_6
Motif
Other DBs
NCBI-GeneID:
118249737
NCBI-ProteinID:
XP_035405879
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All DBs
Position
5:6619025..6669664
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AA seq
718 aa
AA seq
DB search
MSGDGGAGDQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVA
QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYK
EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP
MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP
QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQ
YLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV
HSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME
YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE
KSGEIWARFLAFESNIGDLASILKVEKRRFTAFKEEYEGKETALLVDRYKFMDLYPCSAS
ELKALGYKDVSRAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAP
PGLHPVPGGVFPVPPAAVVLMKLLPPPVCFQGPFVQVDELMEIFRRCKLPDTVDEAVRII
TGGLPEITVEGNGPVENNAMLNKGVKRPNEDSDDDEEKGSVVPPVHDIYRARQQKRIR
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtccggagacggaggcgccggcgaccaggctgccgaatatgtcccagaaaaagtgaag
aaagctgaaaagaaattagaagagaatccatatgaccttgacgcttggagcattctcatt
cgagaggcacagaatcaacctatagacaaagcacggaagacctatgaacgccttgttgcc
cagttccccagttctggcagattctggaaactgtacattgaagcagagattaaagcaaaa
aattatgacaaagtggaaaagttatttcagcgatgccttatgaaggttttacacattgat
ttatggaaatgttacctttcctatgtacgagaaaccaaggggaagctacctagctacaaa
gaaaaaatggctcaggcatatgattttgctctggataagattggcatggaaatcatgtca
taccagatctgggtggattacatcaattttttgaagggcgtagaagcagtaggatcttat
gctgaaaaccagaggataacagctgtccgtagggtttaccagcgtgggtgtgtgaatcca
atgattaacatagaacagctctggagagattataacaaatacgaagagggaatcaatatt
cacttagctaagaagatgattgaagacaggagtagagattatatgaacgcacgacgtgta
gcaaaggaatatgagacagttatgaaaggcctggaccgcaacgctccttctgtcccccca
caaaatactccacaagaggctcagcaggtagacatgtggaagaaatacatccagtgggaa
aagagcaacccactacgcacagaagatcaaactctcataacaaaaagagttatgtttgcc
tatgagcaatgccttttggttctgggacatcacccagatatctggtatgaagctgcacag
tatcttgagcaatctagtaagctgctagctgaaaaaggggacatgaacaatgccaaactt
ttcagtgatgaggctgctaatatttatgaaagagcgatcagcactttactaaagaagaat
atgcttctttattttgcatacgcagattatgaagagagtcgaatgaagtatgagaaagta
cacagcatatataatcgactcttggctattgaagatattgatccgactctggtttatatc
caatatatgaaatttgcaaggcgagcagaaggcataaaatctggaagaatgatatttaag
aaagcaagagaagatgcccgaacccgccaccatgtctatgttacagcagctttaatggag
tattattgtagtaaggataagtctgtggcctttaagatttttgagctggggctgaagaaa
tacggggacattccagaatatgtactggcatatattgactacctgtctcaccttaacgag
gacaataatacaagagttttgtttgaacgtgttttaacttcagggagcctcccacctgag
aaatctggggaaatctgggctcggtttttagcttttgaaagtaacattggtgatctagct
agtatactgaaagttgaaaaacggaggtttacagcattcaaggaagaatatgagggtaaa
gaaacagccctgctcgtagacaggtataagttcatggacttgtacccttgctctgcaagt
gaacttaaggctcttggttataaggatgtctctcgtgccaagctggcagctataattcca
gaccctgtggttgcaccgtccattgtgcctgttctcaaagatgaagtagacagaaagccc
gaatatccaaaaccagacactcaacaaatgattccatttcagccaagacacttagcacct
ccaggtttacatcctgtaccaggtggtgtatttcctgttccaccagcagctgtagttcta
atgaagcttctgccacctcccgtttgttttcagggtccctttgttcaagtggatgagctc
atggagatatttagaagatgcaaactgccagacactgttgatgaagctgtgcgaataatt
actggaggcctacctgaaataactgtggaaggcaacggacctgtggaaaataatgctatg
ctcaacaagggtgtcaagagaccaaatgaagattctgacgacgatgaggagaaaggatca
gtagttccccctgtacacgacatttacagagcacgacaacaaaagagaatccggtga
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