Cygnus atratus (black swan): 118251294
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Entry
118251294 CDS
T09349
Symbol
SOX17
Name
(RefSeq) transcription factor SOX-17
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
cata
Cygnus atratus (black swan)
Pathway
cata04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
118251294 (SOX17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cata03000
]
118251294 (SOX17)
Transcription factors [BR:
cata03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
118251294 (SOX17)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
118251294
NCBI-ProteinID:
XP_035409167
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All DBs
Position
2:119409855..119411281
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AA seq
413 aa
AA seq
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MSSPDAGYASSEDQAQGRCSLSIMMPAVGPCPWAEALSPLGEAKAKSEAAPSGPSGGRSK
SEARIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALSLAEKRPFVEEAER
LRVQHMQDHPNYKYRPRRRKQVKRLKRVESGFLQHGLAEAAAAAAGPGSEGGGGGRMCAE
SLGLPYGEQGYAAGPGGGHYRDCPPLGAAFDGYGLPTPDPSPLDAADSEAPFFAAGLPEE
GGPGPYGSYGPQAAGEYPAAGAGESPSGAALRRHLAAGEPLGPAGSLQGLLGCPAPLHAY
YGQMCQPPGPGRGPPPVLPPVLPPVLPLPSGGQPSPPAEAAPCREALEHLPQDELLGEVD
RAEFEQYLRFACKAELGLPLAGHDAAEGLSAGPISAAVSDASSAVYYCGYPDG
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccccgatgcgggctacgccagcagcgaggaccaggcgcaggggcggtgctcg
ctgtccatcatgatgccggccgtgggcccctgcccgtgggcagaggcgctgagcccgctg
ggcgaagcgaaggcgaagagcgaggcggcgccgtcggggccgtcgggcgggcggagcaag
agcgaggcgcggatccggcggcccatgaacgccttcatggtgtgggccaaggacgagcgc
aagcggctggcgcagcagaacccggacctgcacaacgccgagctcagcaagatgctgggt
aaatcgtggaaggcgctgtcgctggcggagaagcggccgttcgtggaggaggcggagcgg
ctgcgggtgcagcacatgcaggaccaccccaactacaagtaccggccgcggcggcggaag
caggtgaagcgcctgaagcgggtggagagcggcttcctgcagcacggcttggcggaggcg
gcggcggcggcggccgggccgggcagcgagggcggcggcggcggcaggatgtgcgccgag
agcctggggctgccctacggcgagcagggctacgcggcggggccgggcggcggccactac
cgggactgcccgccgctgggcgccgccttcgacggctacgggctgccgacgccggacccg
tcgccgctggacgcggcggacagcgaggcgcccttctttgcggcggggctgccggaggag
ggcggcccggggccctacggcagctacggcccgcaggcggccggcgaatacccggcggcg
ggggccggggagagcccgtcgggggccgcgctgcggcggcacctggccgccggcgagccg
ctggggccggccggctcgctgcaggggctgctgggctgcccggcgccgctgcacgcctac
tacgggcagatgtgccagccgccgggcccggggcgcggccccccgcccgtgctgcccccg
gtgctgcccccggtgctgccgctgccgtcgggggggcagccgtcgcccccggccgaggcg
gcgccgtgccgggaggcgctggagcacttgccgcaggacgagctgctgggcgaggtggac
cgcgccgagttcgagcagtacctgcgcttcgcctgcaaggccgagctggggctgcccctg
gccggccacgacgccgccgaggggctctcggccgggcccatctccgccgccgtgtcggac
gccagcagcgccgtctactactgcggctaccccgacggctga
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