Cygnus atratus (black swan): 118251365
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Entry
118251365 CDS
T09349
Symbol
PCDH20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
118251365 (PCDH20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cata01009
]
118251365 (PCDH20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cata04515
]
118251365 (PCDH20)
Protein phosphatases and associated proteins [BR:
cata01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118251365 (PCDH20)
Cell adhesion molecules [BR:
cata04515
]
Cadherins
Protocadherins
118251365 (PCDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
SGBP_BT4661-like
He_PIG
Motif
Other DBs
NCBI-GeneID:
118251365
NCBI-ProteinID:
XP_035409305
LinkDB
All DBs
Position
1:172322375..172328643
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AA seq
951 aa
AA seq
DB search
MGTVSGCRGEERRRAGGGAGALLGRSRRRRPGMGPPGSRGSTSSSRGSLQHLLLFLLFVG
PFNCFASYSRATELFYSLNEGLPAGVLIGSLARDLRLPMAGGQRPTAPQPPLSFTLASRG
LGGQYVHLDNRSGELHTSALEIDREALCMENGGATVFGEADSTSSSSSSSLSSESCLLLL
DVLVLPQEYFRLVKVKIAIRDVNDNAPHFPVPHICLSVPENAPVNTRLAIEHPALDPDVG
TNGVQTYRLRDNYGVFTLDVEENESGERTPYLIVMGALDRETREEYVTVIIAEDGGTPPL
VGSATLTIGISDINDNCPQFSDSQLNVTLYGNSSLGTHVATVHAEDLDLGSNAEITYSYS
QKVPQPSRDLFHLDESTGAITLSRKIDGDAPRLHRLIILGNGPGCIPAVITVLVTIIKVM
MRPPEVVPRFIANEVEGVVYLKELEPINTPIAFFTIKDPDEKYKVNCYLDGDGPFRLSPY
KPYNNEYLLETTKPLDYETQQLYEISVVAWNSEGFNVNKIIKIQVLDDNDNSPVFSQQLI
ELSIEENNVPNAFLTKLHATDADSGEGGEVSYFLGPDAPSYFSLDKTTGVLTVATQLDRE
EKEKYRYTVKAVDSGFPPRESIATVTITVLDKNDNSPRFINKDFSFFVPENFPGFGEIGV
ISVTDADAGQNGWVALSVLNGSDIFVIDTGKGVLRAKVSLDREQQSSYVLWIEAVDGGDP
ALSSTAKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPITEVYAVDKDTGMNAVI
AYSIIGRRGPRPESFRIDPKTGNITLEESLMQNDYGLYRLLVKVSDHGYPEPLHSTVMVN
LFVNDTVSNESYIESLLRKDPDINIEEKQPQISIEPTHQKMESASCMPTLVALSIISLGS
IALVTGMGIYICLRKGKKHHRADENMEVQIPLNGRINLHMLEKKPMEISNI
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atgggcacggtctcgggctgccgcggggaggagaggcgccgggcgggcggcggagcgggc
gcgctgctggggcgcagccggcggcggaggccgggcatggggcccccgggcagccgcggc
agcaccagcagctcccgcggcagcctccagcacttgctcctcttcctcctcttcgttgga
cctttcaactgcttcgccagttacagccgcgccactgagctcttctacagcctcaacgag
gggctgcccgccggggtgctcattggcagcctggcccgtgacctgcggctgccaatggct
ggcgggcagcgccccacagccccccagccacccctctccttcaccctggcctcccgtggc
ttggggggacagtacgtgcatctggacaaccgctccggagagctgcatacctcggccctg
gagatcgaccgggaggctctgtgcatggagaatggtggggccactgtctttggggaggca
gatagcacgtcctcctcctcctcctcctcactctcgtccgagtcatgcctgctgctgctg
gacgtgctggtgctgccgcaggagtacttccgcctggtgaaggtgaaaatcgctatccga
gatgtcaatgacaacgctccccacttccctgtgccccacatctgcctctcggtgcctgag
aacgcacctgtgaacacccgcctggctattgagcaccctgcccttgaccccgacgtgggc
accaatggtgtccagacttaccgtctgcgagataactacggtgtcttcaccctggacgtg
gaggagaatgaaagcggagagaggaccccctacctgattgtcatgggggctctggacaga
gagacacgggaggagtatgtcacggtcatcattgctgaggatgggggcactcctccgcta
gtgggcagtgctacgcttactattggcatcagcgacatcaatgacaactgcccccagttt
agcgactcgcagctcaacgtcaccctttatgggaattccagcctagggacacatgtggcc
actgtccatgcagaagacctggaccttgggtccaatgcggagatcacctactcctacagc
cagaaggtccctcagccatccagagacttgttccacttggatgaaagcacaggagccatc
actctctccagaaagattgatggggacgccccaaggctccacaggctgatcatattgggc
aatggtcctggttgtatccctgctgtgatcacagtgctagtgaccatcatcaaagtcatg
atgaggccacctgaagttgtccctcgtttcatagctaatgaagtggaaggagtggtgtac
ttaaaggaattggagcctattaacacaccaatagcattttttaccatcaaagaccctgat
gaaaaatacaaagttaattgctatttggatggtgatgggccattcagactttcaccatac
aagccatacaacaatgaatacctcttagagaccacaaaacctttggactatgagacacag
cagctgtatgaaatctctgtagttgcatggaactcagaaggatttaacgtaaacaaaata
atcaaaatacaagttttggatgacaatgacaactcaccagttttctctcaacagctgata
gaattatccattgaggaaaacaatgttcccaatgctttcttgaccaaactgcatgctaca
gatgctgacagtggagaaggaggggaagtgtcctattttttagggcctgatgctccttcc
tatttttctttggataaaaccacaggagttcttacagttgccactcaactggacagagaa
gaaaaggagaaatacagatatactgtgaaagcagtagattctgggttccctccaagagag
tcaatagcaactgtcaccatcactgtgttggataaaaatgataatagtccaagattcatc
aataaggatttcagcttttttgtgccagaaaactttccaggttttggtgaaatcggagtt
atcagtgtcacagatgctgatgcagggcaaaatggatgggttgccctttcagtcctgaat
ggaagtgatatttttgtcatagatactggaaaaggagttttgagagctaaagtctccctg
gacagggaacagcaaagctcctatgtgctgtggatcgaagcagttgatggtggtgatcct
gcgctgtcttctactgcaaaaataactatccttcttctggacataaatgacaacccccct
ttggtattgtttccacagtctaatatgtcttatttgttggttcttccttctacccttcct
ggctctcccatcactgaggtctatgctgtcgataaagacactggcatgaatgcagtcata
gcatacagcatcataggaagaagagggccccggccagagtcatttagaattgaccctaaa
actggtaatatcaccttggaagagtcgctcatgcaaaatgactatggcctgtatcgactg
cttgtaaaagttagtgatcacggctatccagaacctctccattccactgtcatggtgaat
ctcttcgtcaatgacacagttagcaatgagagctacattgaaagtttattaagaaaggat
cctgatatcaatatagaagaaaagcagccgcaaatatccatagagcctacacatcaaaaa
atggagtcagcatcctgcatgcctactttagtagctctgtcaataataagcttgggttca
attgctttagtaactgggatgggcatttacatctgtctgagaaaagggaaaaagcatcac
agagcagatgaaaacatggaagtacaaatcccattaaatggaagaattaacctgcacatg
ttggagaagaaaccaatggagatttccaacatatga
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