KEGG   Cygnus atratus (black swan): 118251475
Entry
118251475         CDS       T09349                                 
Symbol
ERCC8
Name
(RefSeq) DNA excision repair protein ERCC-8 isoform X2
  KO
K10570  DNA excision repair protein ERCC-8
Organism
cata  Cygnus atratus (black swan)
Pathway
cata03420  Nucleotide excision repair
cata04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:cata00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    118251475 (ERCC8)
  09124 Replication and repair
   03420 Nucleotide excision repair
    118251475 (ERCC8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cata04121]
    118251475 (ERCC8)
   03400 DNA repair and recombination proteins [BR:cata03400]
    118251475 (ERCC8)
Ubiquitin system [BR:cata04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     118251475 (ERCC8)
DNA repair and recombination proteins [BR:cata03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      118251475 (ERCC8)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st EIF3I Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_EML Beta-prop_TEP1_C WD_LRWD1 ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_IFT122_1st NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_RIG_1st Beta-prop_WDR19_1st Beta-prop_Nup120_160 Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_Vps41 Beta-prop_DCAF4 Beta-prop_WDR11_1st Beta-prop_HPS5
Other DBs
NCBI-GeneID: 118251475
NCBI-ProteinID: XP_035409497
LinkDB
Position
Z:complement(20826319..20862751)
AA seq 399 aa
MLGFLSGRQAGLDDPLRLRRAEATRRVLSLELNKDRDVERIHGNGINSLDIEPVEGRYML
SGGSDGVIVLYDLENLSRKPSYTCKALCSVGRSHPDGHRFSVETVQWYPHDTGMFTSSSF
DKTLKIWDTNTLQPADVFHFEGTVYSHHMSPVATKHCLVAVGTKSPKVQLCDLKSGSCSH
ILQGHRQEVLAVSWSPRHEYILATASADSKVKLWDVRRASGCLTTLDQHNGEKTKASSEA
ANTAHNGRVNGLCYTSDGLHLLTIGTDDRMRLWNSSTGENTLVNYGKVRNESRKGLKFAI
SCGCSPEFAFVPCGSTIAVYTVFSGELITMLRGHYNTVDCCVFQPNFQELYSGGKDCNIL
AWIPALREPVPDDVSDKCLPQQHLNPAYEDAWSSSDDEG
NT seq 1200 nt   +upstreamnt  +downstreamnt
atgttggggttcctgtcgggccgccaggccgggctcgacgacccattgcggctgcgccgc
gccgaggccacccggagggttctaagtttggaattaaataaagatagagatgtggaaaga
atacatgggaatggtattaacagccttgatattgagcctgttgagggaagatacatgtta
tcaggtggttccgatggtgttattgtactttatgaccttgaaaacctgagcagaaaacca
agttacacatgtaaagcactttgttctgtgggaaggagtcatcctgatggacatagattc
agtgtggagacagtccagtggtatcctcatgatactggcatgtttacatccagctcattt
gataaaaccttgaaaatttgggatactaatactttacaacctgcagatgtatttcacttt
gagggaacagtctatagccatcacatgtctccagttgctacaaagcactgtttagtagca
gttggtaccaaaagccccaaagtacagctctgtgacttgaagtctggatcctgttctcac
attctgcagggtcacaggcaagaagtactggcagtgtcttggtccccacgtcatgaatat
attttggcaacagcaagtgctgacagtaaagtaaaattatgggatgtgaggagagcatct
ggatgtctaactacgcttgatcagcacaatggagaaaagaccaaagcatcttctgaggca
gcaaatacagctcacaatgggagagttaatggtttatgctatacaagtgatgggcttcat
ctgctgaccattggtacggatgatcgcatgagactctggaacagctccactggagaaaat
acattagtgaactatggtaaagtccgcaatgaaagtagaaaaggactcaaatttgccatc
tcttgtggctgcagtccagagtttgcgtttgtgccatgtggtagtaccattgctgtttat
acagttttctcaggagaactgataactatgcttagaggacattataatactgttgactgc
tgtgtatttcaacctaactttcaggaactttatagtggtggcaaagattgcaatatcctc
gcatggataccagctcttcgagagccagttcctgatgatgtttctgacaagtgtctgcct
cagcagcatttaaatccagcatatgaagatgcatggagcagcagtgatgatgaaggctga

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