Cygnus atratus (black swan): 118251741
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Entry
118251741 CDS
T09349
Name
(RefSeq) sodium channel protein type 5 subunit alpha-like isoform X1
KO
K04842
voltage-gated sodium channel type X alpha
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cata04040
]
118251741
Ion channels [BR:
cata04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
118251741
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
GPHH
IQ
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
118251741
NCBI-ProteinID:
XP_050564483
LinkDB
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Position
2:5933150..5968030
Genome browser
AA seq
2004 aa
AA seq
DB search
MAEFILSGTNNFRKFTYESLAAIEKRIAAKKDCQKNIIDQKPEEKPRPQLDLKAFQKLPA
LYGNPPPELIGEPLEDLDPYYKDRKIFIVLNKQKTIFRFTATRALWILSPFHPIRRTAIK
ILIHSLFTWFIMCTIITNCVFMAQNESKSSASSSWNKYVEFTFTGIYTFESLIKILARGF
CLNEFTFLRDPWNWLDFSVIVMAYVGAFSSLGSVSVLRTFRVLRALKTISVVPGLKIIVG
ALIQSVKKLANVMILTVFCLSVFALIGLQLFKGNLRQKCIRNYTDPSIKEYLQNKTWESY
EMFANYTEHFAQKPDSSDILLCGPSAGTCPPEYTCLKIGPNPDYGFTSFDTFGWAFLSLF
RLMTQDYWERLYQQTLRASGKVYILFFMLVIFLGSFYLVNLILAVVTMAYEDQNKATIAE
TEAKERKFREAMELLQKEQESLAAKGIDILSISSFEASPLSTKEIKERSNRKKRNKSLGI
EDYEEQQFPKLQPTDSQRKLALLGLVYGPNTNQVKRRLSHGSVFNFQIPALEVDSKVDFG
DEETRSAGENEIQGRSLSVPQVGRRCSMQSQASHGSHPATPSCGQGGKWTNTDDCNGMIS
VMEGGNGKVHGLDPASTEGVPLPPVMEDPGKGDLPAVNDESSMMHLHPHLSVEYFNEAFQ
RQRAASAVSIITSVLEELEESQRRCPPCLKDFALKYLIWDCCPLWLRIKKKVAAFIKDPF
IDLTITLCIVMNTLFMALEHNNMSDNFKSMLNVGNLVFTGIFTAEMILKIIALDPYYYFQ
QPWNIFDSIIVTLSLIELSLPKHKGKKERRKGGTLSVLRSFRLLRVFKLAKSWPTLNTLI
KIIGNSLGALSNLTLVLAIIVFIFAIVGVQLFGSNYRDNIFKINKNGKPRWHMMDFFHSF
LVIFRILCGEWIETMWDCMVVAEKPLCLLVFLLVMVIGNLVVLNLFIALLLNSFSTDCLQ
TAEDDGEMNNLRIAFARINKGFHSVKSVTWDTCCGKLRHLKKAHRKKNKLTAQNPLGLGE
ERKNCKENYSNEWGEKNWENCAGLEDFITNPNVFVCVPIAEAENTSDGFEDDDKLSTFTD
IEYSKQEENHLRQRGEKGKNSGSWSKGSGLSSEEFSVLYLGKDRKAEPSSPEQKEFDSAS
SSEGSTVDLTNPEDLLRQIPEFAEDMKTPEKCFPEGCVRYFRCYKGSALNFGGQTWWNLR
KTCYQIVEHSWFESFIIFMILLSSGALAFEDIHINERKHIKAMLSFLDKMFTFIFVLEML
LKWVAYGFKKYFTNAWCWLDFLIVDVSSVSLINLLGSSFDAVKSLRTLRALRPLRALSRF
EGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFGKCVNMTEENSVLNTSI
NDLTDCKMYNNTGKIFWVNVKVNFDNVGSGYLALLQVATFKGWMDIMYAAVDSREKNEQP
QMEHSLFMYLYFVNFIIFGSFFTLNLFVGVIIDNFNQQKKKISGEDIFMTEEQKKYYNAM
KKLGSKKPQKPIPRPLNRYQGFLFDIVTRQAFDVIIMILICLNMITMMVETYDQSETKTN
ILNKINILFVAIFTAECVVKLVALRQYYFSNAWNIFDIVVVIMSLLALLLSGIGKALEHF
LPPTLFRVIRLARIGRILRLIRAAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGV
ANFAYVKMEDGIDDMFNFQTFANSMLCLFQITTSAGWDGLLSPLLNTGPPFCDPNVRGRV
GECGKPAIGIIYFVSYIIISFLIVVNMYIAVILENFNAATEESTEPLGEDDFDIFYEIWE
KFDPEATQFITFSALSDFADALAEPLRVPKPNKIELIAMDLPMVSGDRIHCLDILFAFTK
RVLGDSGEMDTLKVQMEEKFMSVNPSKKSYEPISTTLRHRQEEASATVIQRAYRSHLLQR
SIKHASYLYHHRTYSGDTLGDAAPEKEGLIASMMRENYGRNLEKSETSSSTSFPPSYDSV
TRASSGNLMIENELTGQQQSPDIK
NT seq
6015 nt
NT seq
+upstream
nt +downstream
nt
atggctgagttcatactctctggtacaaacaacttccgtaagttcacttacgaatctttg
gctgctattgaaaagagaattgctgccaagaaggattgtcaaaaaaatatcatagaccag
aaacctgaggagaaaccacgtcctcaacttgacttaaaagctttccagaaattaccggct
ctgtatggaaatcctcctccagagctcattggggaaccactggaagatcttgacccgtac
tacaaagatcgcaagattttcatagtgctaaacaaacagaaaacaatcttcaggtttact
gctacacgtgccttatggatcctcagtcctttccatccaatccgaagaacagcaattaaa
attttaatacattcattattcacttggtttataatgtgcactattataactaattgtgtg
ttcatggctcagaatgagtctaagagttctgcatcttcttcatggaacaaatatgttgaa
tttactttcactggcatttacacttttgaatcattgataaaaatattggcaagaggattc
tgcctaaatgaattcactttccttcgagatccctggaactggttggatttcagtgtgatt
gttatggcgtatgtgggagcattcagtagcctggggagtgtatcagtccttcggactttc
agggttctgagagccttaaaaaccatttcagtagtcccaggactcaagatcattgtaggg
gcacttatccagtctgttaagaaacttgccaatgtgatgatcctgaccgttttctgcctg
agtgtctttgccctcataggcctccagcttttcaagggcaatctgagacagaagtgtatc
aggaattatacagatcccagtatcaaagagtatttacaaaacaaaacatgggaatcctat
gaaatgtttgctaattatacagaacattttgctcagaagccagactcctcggacatcttg
ctatgtggtcccagcgctgggacctgtcctccagaatacacatgcttgaaaattgggccc
aatcctgattacggtttcaccagttttgatacctttggctgggcttttctttccttattc
cgcctgatgacccaggactactgggagcgtctgtatcagcagaccctcagagcttctggg
aaggtgtatatactcttcttcatgctggtcatctttctgggctcattttatctagtcaac
ttgattctggctgtagtaacaatggcatacgaagaccagaacaaggccactattgctgaa
acagaggcaaaggaaaggaaatttcgggaagccatggaattattgcagaaagagcaggag
tcattggctgctaaagggattgatatcctgtcaattagctccttcgaagcctctcctttg
tctaccaaagaaatcaaagaaagaagcaataggaaaaagagaaataagtccttggggata
gaagattatgaagaacaacaatttcccaagttacagcccacagacagtcaacgaaagttg
gctctccttggcttggtgtacggccccaacactaatcaggtgaaacgcaggctgagccac
gggagtgtattcaatttccaaatacctgccttagaagtcgactccaaagtggattttggt
gacgaggagactcgcagtgcaggggagaacgaaatccaggggagatcactgtcggtgccg
caggtgggaagacgctgcagcatgcagagccaagcaagccatggctcccatcctgctacc
cccagctgcgggcagggaggcaagtggaccaacaccgatgactgcaatggcatgatttcg
gtgatggaaggagggaatggcaaggtgcacggtctagatccagcatctactgaaggggtt
ccacttccgccggtaatggaagacccagggaagggtgatctgccagctgtaaatgatgag
agcagcatgatgcatttgcatcctcatctgtcagtggagtactttaatgaggcatttcag
agacaaagggcagcaagtgcagtcagcataattaccagtgtcttggaggaacttgaagaa
tcccaacggagatgcccgccatgcctgaaagattttgctttaaagtatctaatttgggac
tgttgtccactttggttgagaatcaagaaaaaagtagctgctttcataaaggatcctttc
attgatctcaccatcactctttgcattgtgatgaacactttgttcatggcactggaacac
aataatatgtcagataattttaaatcaatgcttaatgtaggcaacttggtctttacagga
atcttcactgcagaaatgatcttaaaaatcattgctctagatccctattattattttcag
cagccctggaatatttttgacagcataattgtcacattgagtttaattgaattgagttta
cccaaacacaaaggcaagaaagagagaagaaaaggaggaaccctgtcagttttacgatcc
ttcagactgctgagggtcttcaaactggcaaagtcctggccaactttaaatactcttatt
aaaatcattggtaactctctgggcgcactgagtaacctgaccctcgtcctggcaatcata
gtttttatttttgctatagtaggagtgcaactttttgggtcaaactatagagacaacata
tttaaaataaacaaaaatggcaagccacgctggcacatgatggactttttccattcgttc
ctcgtcattttccgaattctgtgtggagaatggattgaaaccatgtgggactgcatggtg
gtagctgaaaaaccactgtgccttcttgtctttctgctggtcatggtgataggaaattta
gtggtcctcaaccttttcattgcattgctgctgaattctttcagtaccgactgtctccag
acagcagaagatgatggagagatgaacaatcttcggattgcctttgctcgcattaacaag
ggatttcactctgtgaagagtgttacgtgggacacctgttgtggaaagctcaggcatcta
aagaaagcacacagaaagaaaaacaaattgacagcccagaacccacttggtctgggagaa
gaaagaaaaaattgtaaagagaattacagcaatgaatggggtgaaaaaaattgggaaaac
tgtgcagggcttgaagattttattaccaatcccaatgtatttgtttgtgtccctattgct
gaggcagagaatacaagtgatggttttgaagatgatgataaactgagcacatttacagac
atagaatacagtaagcaggaggaaaatcatctgaggcaaaggggagaaaaagggaaaaat
tcaggaagctggagcaaggggtcaggactttcctctgaagaattcagtgtgctttaccta
ggaaaagataggaaggctgaaccatcatcaccagagcaaaaagagtttgacagtgccagc
tcctctgaaggcagtacagtggatctgacaaatcctgaagatcttttgaggcagattcca
gagtttgctgaagacatgaagactccagaaaagtgttttccagaaggttgtgttcgatac
tttcgttgttataagggcagtgccctaaactttggaggacaaacatggtggaatctgaga
aaaacctgctaccaaattgttgaacattcctggtttgaatcctttatcatattcatgatt
cttctgagcagtggagccttggcttttgaagacatccatataaatgagagaaaacacatt
aaagctatgttgtcatttcttgacaaaatgttcactttcatctttgttctggagatgctc
ctgaaatgggtggcttatggcttcaagaagtatttcaccaatgcctggtgctggcttgac
tttcttatagtagatgtgagttctgtctctttaataaatctcttaggtagctcatttgat
gctgtgaaatctcttaggactctccgagctctgagacccttaagagcattgtcaagattt
gaggggatgagggtggtggtcaatgccctcgtgggagccatcccttctatcatgaacgtt
ctgcttgtctgcctcatcttctggctcatctttagcatcatgggggtgaacctgtttgct
gggaagtttgggaaatgtgtcaatatgacagaagaaaattcagtattgaatacttcaatc
aatgacttaacagactgcaaaatgtataataacacaggaaaaatattctgggtcaatgtt
aaagtcaacttcgataatgttggctctggctacctggctcttcttcaggtggcaacattt
aaaggttggatggacatcatgtatgcggcagtagattcacgagagaaaaatgaacagcca
caaatggagcacagtttatttatgtatctctactttgtgaacttcatcatctttggatct
ttctttaccctgaatctctttgttggtgttattattgacaatttcaaccaacaaaagaaa
aagataagtggggaagatatctttatgacagaagaacagaaaaaatattacaatgcaatg
aaaaagttgggatccaagaaacctcaaaaacccattccaagaccactgaatagataccaa
gggttcctttttgacattgtaacacgtcaggcctttgatgtcatcatcatgattctcatc
tgccttaatatgatcactatgatggtggaaacctatgaccaaagtgaaacgaagactaac
attcttaacaagatcaatatactcttcgttgctatctttactgcagaatgcgtagtgaaa
ttggtggctctgaggcagtactatttctcgaatgcctggaacatatttgatatagttgtt
gtgatcatgtcacttcttgctttactgctttctggcattggtaaagcacttgaacatttc
ttaccacccacactcttcagggttattcgcttggctcggattggacgaatactgagactc
atacgggctgccaaaggaattcgaactctgctcttcgccttaatgatgtccttacctgct
ctatttaacattggcctcttgctttttctagtcatgttcatttatgctatttttggcgtg
gctaattttgcttatgtgaagatggaagatggcattgatgacatgttcaatttccaaacc
tttgctaacagcatgctctgtctcttccaaatcacaacgtcagctggctgggatggtctt
ctcagtcctcttttaaacaccgggccaccgttttgtgatccaaatgtgagaggtagagta
ggtgaatgtggtaaacctgcgataggaattatttattttgtgagttacatcattatatca
tttctcattgttgtaaacatgtatatagctgttattttggagaacttcaatgctgctact
gaggaaagtacggagcctttaggggaagatgactttgacatcttttatgaaatctgggag
aaatttgaccctgaagcaactcagttcataactttctctgcactttcagactttgcagat
gctctggctgaacctttacgtgtaccgaaaccaaacaaaattgaactcatagcaatggac
ctgcctatggtcagtggagacaggattcactgcttggatatcttgtttgctttcaccaaa
agagtgttaggagattctggggagatggatacactaaaagtacaaatggaggagaagttc
atgtctgttaatccatccaaaaaatcctatgagccaatctctactacactcagacacaga
caagaggaagcttctgccaccgtcatccagcgtgcctacaggagtcatttgctccagcgc
tccataaagcacgcttcttacctgtaccatcacagaacgtacagtggtgacactcttgga
gatgctgctccagaaaaagaaggacttattgcatctatgatgagagaaaactatggcagg
aatcttgaaaagtctgaaacttcttcctcaacgtcctttcctccatcatacgacagtgtc
acaagagccagtagtggcaatctgatgattgagaatgaacttacaggtcagcaacaatcc
ccagacataaaatag
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