Cygnus atratus (black swan): 118252909
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Entry
118252909 CDS
T09349
Symbol
THOC5
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118252909 (THOC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cata03019
]
118252909 (THOC5)
03041 Spliceosome [BR:
cata03041
]
118252909 (THOC5)
Messenger RNA biogenesis [BR:
cata03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
118252909 (THOC5)
Spliceosome [BR:
cata03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
118252909 (THOC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
118252909
NCBI-ProteinID:
XP_035412611
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All DBs
Position
17:1927376..1938187
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AA seq
683 aa
AA seq
DB search
MSSEAGKKRKPKVIRTDGAPPEGKRGKAEGEQDARYYSEECEVDLRDPIKDYELYKETCQ
ELQRLMAEIQELKSRGIKENASEIDERRVQSCVHFMTLKKLNRLAHIRLKKGRDQTHEAK
QKVDAYHLQLQNLLYEVMHLQKEITKCLEFKSKHEEIELVSLEEFYSEAPTEISRPDITL
TEPHQQTLARLDWELEQRKRLAERYKECLTIKEKILKEIEVKKEYLSSLQPRLNSIMQAS
LPVQEYLFMPFDQAHKQYETARHLPPPLYVLFVQASAYGQACDKKLVVAIEGSVEEAKAL
YKPPEDSQDDESDSDVEEEQTTKRRRPTLGVQLDDKRKEMLKRHPLSVTIDLKCKDENVL
HLTFYYLMNLNVMTVKTKVTTAVEMTTAISAGDLLSPDSLLSCLYPGDHGKKTPNPANQF
QFDKVGILTLSDYVTELGHPYVWVQKLGGLHFPKDQPQHTVAADNSLSASHMELTVKLLR
TRLQSRLALHKQFASLEHGVVPVSSECQHLFPTKIVSRLVKWTAIPFEDYAELPYTKDVL
EAGLAEDTHLYYMALIERGTAKLQAAVVLNPGYSALPPIFSLCLNWKGERTGNNDDNIRA
MESEVNVCYKELWGPKPGYQLLTNQLQRLCMVLDVYLETEPHDTSVEGPKEFPQEKMCLR
LVRGPMRLKPFKFNYPQGFFSHR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcggaggccggcaagaagcggaagcccaaagtgatccgcacggacggcgccccg
ccggagggcaagcgcggcaaggcggagggcgagcaggacgcccggtactacagcgaggag
tgcgaggtggatctccgcgaccccatcaaggactacgagctgtacaaggagacctgccag
gagctgcagaggctcatggcggagatccaggagctgaagagcaggggcatcaaggagaac
gcctccgagatagacgagcggcgcgtgcagagctgcgtgcacttcatgaccctgaagaag
ctcaaccggctggcgcacatccgcctgaagaaggggcgagaccagacccacgaggcgaag
cagaaggtggacgcctatcacctgcagctccagaacctgctctacgaggtgatgcacctg
cagaaagagatcaccaagtgcctggagttcaaatcgaagcacgaggagatcgagctggtc
agcctggaggagttctacagcgaggcccccaccgaaatcagccggccggacatcaccctg
accgagccccaccagcagaccctcgcccgcctcgactgggagctggagcagcgcaagagg
ctggcggagaggtacaaggagtgcctgaccatcaaggagaagatcctgaaggagattgag
gtgaagaaggagtacctgagcagcctgcagcctcgcctcaacagcatcatgcaggcctcc
ctgcccgtccaggagtacctcttcatgcccttcgaccaggcgcacaagcagtacgagacg
gcccggcacctgccgccgcccctctacgttctcttcgtccaagccagcgcctacgggcag
gcctgcgacaagaagctcgtcgtggccatcgaaggcagcgtggaggaagccaaagccctg
tacaagccgcccgaggactcgcaggatgatgagagcgactctgacgtggaggaggagcag
accacgaagcggcgccggcccacgctgggcgtgcagctggacgacaagcgcaaggagatg
ctcaagcggcacccgctgtccgtcaccatcgacctcaagtgtaaagacgagaacgtgctc
cacctgaccttctactacctgatgaacctcaacgtcatgacggtgaagaccaaggtgacc
actgccgtcgagatgacgactgccatcagcgccggcgacctgctctccccggactccctc
ctgagctgcctgtacccgggagaccacgggaagaagacccccaaccccgccaaccagttc
cagttcgacaaagtgggcatcctgaccttgagcgattacgtgacggagctggggcacccc
tacgtgtgggtgcagaagctgggcggcctgcacttccccaaggatcagcctcagcacacg
gtggccgcggacaactcgctgagcgccagccacatggagctgacggtgaagctgctgcgg
acgaggctgcagtcccgcctggctctccacaagcagttcgcctctctcgagcacggcgtg
gtgccggtctccagcgagtgccagcatctcttccccaccaagatcgtctcgcgcctggtg
aagtggactgccatcccctttgaggattacgcggagctgccctacactaaagacgtgctg
gaggccggcttggccgaagacacgcacctctattacatggccctgatagaaaggggcaca
gccaagctccaggccgccgtggtcctgaaccccggctactccgcgctgccgcccatcttc
agcctctgcctgaactggaaaggagagcgaaccggcaacaacgacgacaacattcgggcg
atggagagcgaggtcaacgtgtgctacaaggagctgtgggggcccaaacccggctaccag
ctcctcaccaaccagctgcagcgcctctgcatggtgctggacgtctacctggagacggag
ccccacgacaccagcgtggaggggcccaaggagtttccccaggagaagatgtgtctgcgc
ctggtcaggggccccatgcgcttgaagcccttcaagttcaactaccctcagggcttcttc
agccaccgctga
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