KEGG   Cygnus atratus (black swan): 118252995
Entry
118252995         CDS       T09349                                 
Symbol
RFC5
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
cata  Cygnus atratus (black swan)
Pathway
cata03030  DNA replication
cata03410  Base excision repair
cata03420  Nucleotide excision repair
cata03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cata00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    118252995 (RFC5)
   03410 Base excision repair
    118252995 (RFC5)
   03420 Nucleotide excision repair
    118252995 (RFC5)
   03430 Mismatch repair
    118252995 (RFC5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cata03032]
    118252995 (RFC5)
   03036 Chromosome and associated proteins [BR:cata03036]
    118252995 (RFC5)
   03400 DNA repair and recombination proteins [BR:cata03400]
    118252995 (RFC5)
DNA replication proteins [BR:cata03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    118252995 (RFC5)
  DNA Replication Termination Factors
   ELG1-RFC complex
    118252995 (RFC5)
Chromosome and associated proteins [BR:cata03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    118252995 (RFC5)
DNA repair and recombination proteins [BR:cata03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     118252995 (RFC5)
  Check point factors
   HRAD17(Rad24)-RFC complex
    118252995 (RFC5)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid Rad17 AAA_16 AAA_22 AAA_24 AAA_11 AAA_assoc_2 AAA_14 DEAD RuvB_N DUF815 ResIII AAA_5 AAA_30 AAA_19 DNAX_ATPase_lid PhoH AAA_7 TIP49 TniB ATPase_2 nSTAND3 Mg_chelatase Thioredoxin_6 AAA_25 Gp44_lid bpMoxR AAA_3 NPHP3_N UBA_Rad5
Other DBs
NCBI-GeneID: 118252995
NCBI-ProteinID: XP_035412804
LinkDB
Position
17:complement(2030020..2032915)
AA seq 329 aa
MAAPGGRNLPWVEKYRPRELSELVSHRDILSTIQRFISEDRLPHLLLYGPPGTGKTSTIL
ACARQLYREREFSSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMT
QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVVQ
EEGVDVSEDGMKALVTLSSGDMRRALNILQSTAMAFGKVTEENVYTCTGHPLKSDIANIL
DWMLNQDFSTAYRKITELKTLKGLALQDILTEIHLFVHRVDFPPSVRIQLLIKMADIEYR
LAAGTSEKVQLSSLVAAFQVTRDLIVAEA
NT seq 990 nt   +upstreamnt  +downstreamnt
atggcggcgccgggcgggaggaacctgccctgggtggagaagtaccggccgcgggagctc
tccgagctggtgtcgcaccgggacatcctcagcaccatccagcggttcatcagcgaggac
cggctgccccacctcctcctctatggcccccccggcaccggcaagacctccaccatcctg
gcctgcgcacggcagctctaccgggagcgggagttcagctccatggtgttggagctgaac
gcctcggacgaccggggaatcgacatcgtcagagggcccatcctgagcttcgccagcacc
aggaccatcttcaagaaaggcttcaagctcgtcatcctggacgaagccgacgccatgacc
caagacgcccagaacgccctgaggcgagtgatcgagaagttcaccgaaaacacccgcttc
tgcctcatctgcaactacctctccaagatcatccccgcgctgcagtcccgctgcacccgc
ttccgcttcgggcccctcaccccggagctgatggtgccccggctgcagcacgtcgtacag
gaggagggggtagatgtgagcgaggacgggatgaaggcgctggtgaccctctcgagcggc
gacatgcgccgagccctgaacatcctgcagagcaccgccatggccttcgggaaggtgacg
gaggagaacgtctacacctgcacggggcatcccctcaagtccgacatcgccaacatcctc
gactggatgctcaaccaggacttctccactgcctatcgcaaaatcacagagctgaagacg
ctgaagggcttggccctgcaggacatcctgaccgagatccacctgtttgtgcacagagtc
gacttcccaccctcggtccgcatccagctgctgatcaaaatggcagacatcgagtaccgg
ctggctgctggcacgagcgagaaggttcagctgagctccctcgtcgcggctttccaagtc
accagggacctgatcgtggctgaagcctga

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