Cygnus atratus (black swan): 118253010
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Entry
118253010 CDS
T09349
Symbol
DDX54
Name
(RefSeq) ATP-dependent RNA helicase DDX54
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cata03009
]
118253010 (DDX54)
Enzymes [BR:
cata01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118253010 (DDX54)
Ribosome biogenesis [BR:
cata03009
]
Eukaryotic type
Pre-60S particles
Helicases
118253010 (DDX54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
Motif
Other DBs
NCBI-GeneID:
118253010
NCBI-ProteinID:
XP_035412839
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All DBs
Position
17:3573694..3579733
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AA seq
830 aa
AA seq
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MAPPPRSRRQRGPGGAGERRRGPQVPETPLPAFPTAKDEDDATAEDTQAMVRAQNKKKKS
GGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILRGRDVVAMARTGSGKTACFLIPMF
ERLKAPSPAGARALILSPTRELALQTLKFTKELGKFTGLRTALILGGDKMEDQFAALHEN
PDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEILARLPGSHQTVL
FSATLPKLLVEFARAGLTEPTLIRLDVESKLSEQLKLAFFHVRGDDKPAVLLHLLRSVVK
PQDQTVVFVATKHHTEYLKELLTAQGICCTHIYSSLDQTARKINIAKFAQGKCPVLLVTD
VAARGLDIPMLDNVINYSFPAKSKLFLHRVGRVARAGRSGTAYSLVAPDEMPYVFDLHLF
LGRPLVLAGTQELPADADGVLGRVPQSLVDDEECLLLTDHEGSLELRSLRRVADNAHKQY
LRSRPGPSPESIKRVKDLDTSQLGIHPLFSSCFEDTELERLKFVDSIKSYKSKATIFEIN
ATARTLASTIMRSKRRHDHALIEKYQRGQQEKRAAALQGQGLCQAPPEPEEKEGEEENLQ
DVFSTVVGRKRKRGQGGEDGARKKPQQPVQRDEEFYVPYRPKDFESERGLSVGGEGSPFE
QQAAGAVLDLMGDENHNLNRSKQLLKWDRKKKRFVGQTGQEDKKKVRTESGRYISGSYKN
NLYEKWKQKHKVDDRDDDEEYERGREQFKGKHKGGHGPRQPAAQGKVRSELKNKQQILKQ
RKAAAKQRFLQRGGLKRLKARNRQRVQELRQMAFGRRVGATKKGKLRKRM
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgccgcctcgcagccgccgccagcggggccccggcggggccggggagcggcgg
cgggggccgcaggtccccgagaccccgttgcccgccttccccaccgccaaggacgaggac
gatgccaccgccgaggacacgcaggccatggtgcgggcacagaacaagaagaagaaatcc
ggaggcttccagtccatgggcctcagctaccccgtcttcaagggcatcatgaagaagggc
tacaaggtccccacgcccatccagaggaagaccatcccggtgatcctgcgcggccgcgat
gtggtggcgatggcgcggacgggcagcgggaagacggcctgcttcctcatccccatgttc
gagcggctgaaggcgcccagcccggctggggcgcgtgctctcatcctctcccccacgcgt
gagctggccctacagaccctgaaattcaccaaggagctgggcaagttcacaggcttgagg
acagctctcatcctgggaggagacaagatggaggaccagttcgctgcattgcacgagaac
cccgacatcatcattgccacccccgggcgcctggtgcatgtggcggtggagatgaacctg
aagctgcagagcgtggagtacgtggtgtttgacgaggctgacaggctctttgagatgggc
tttgcggagcagctccaggagatcctcgcacggctcccaggcagccaccagaccgtcctc
ttctccgccacgctgcccaagctgctcgtcgagttcgcccgggctggtctcaccgagccg
acgctgatccgtctggatgtggagtccaagctcagcgagcagctcaagctggctttcttc
cacgtccgcggggacgacaaaccagccgtgctgctccacctgctgcgcagcgtggtgaag
ccccaggaccagacggtcgtcttcgtggccaccaagcaccacacggagtatctcaaggag
ctgctgacagcccagggcatctgctgcacgcacatctacagctcgctggaccagaccgcc
cgcaagatcaacatcgccaagttcgcccagggcaagtgcccggtgctgctggtcacggac
gtggccgcccgcgggcttgacatccccatgctggacaacgtcatcaactacagcttcccc
gccaagtccaagctgttcctgcaccgtgtcggtcgcgtggcccgagctggccggagcggc
actgcctactcgctggtggctcccgacgagatgccctacgtcttcgacctccacctcttc
ctggggcgtccgctcgtcctcgccggtacccaggagctgcctgcagatgccgacggggtc
ctgggccgtgtcccccagagcctggtggacgatgaggagtgcctgctgctcacggaccac
gagggctcgctggagctgaggagcctgcgccgggtggccgacaacgcgcacaagcagtac
ctgcgctcccgacccggcccctcgcccgagtccatcaagagggtcaaggacctggacacg
tcccagctgggcatccacccgctcttcagttcttgcttcgaagacacagaactggagagg
ctgaagttcgtggacagcattaaaagctacaagtccaaggcgaccatcttcgagatcaat
gccacagcccgcaccctggccagcaccatcatgcggtcgaagcggcgccacgaccatgcc
ctcatcgagaagtaccagcgtgggcagcaggagaagcgggccgcggctctccaagggcag
gggctgtgccaggccccccccgagcctgaggagaaggaaggagaggaggaaaacctccag
gatgtgttctccaccgtggtgggacggaaacggaaacggggccagggtggagaagacggt
gccaggaagaagccgcagcagccggtgcagcgggatgaggagttctacgtcccctaccga
cccaaggactttgagagcgagagggggctgagcgtgggcggcgagggcagcccctttgag
cagcaggcggctggagccgtcctggatctcatgggcgatgagaatcacaacctcaacagg
agcaagcagctgctgaagtgggaccgtaagaagaagcggtttgtggggcaaacgggccag
gaggacaagaagaaggtgcgaacagagagcgggcgctacatcagcggctcctacaagaac
aacctctatgagaagtggaagcagaaacacaaagtcgacgaccgggatgacgacgaggaa
tacgaacgaggcagggagcagttcaaagggaagcacaagggtgggcatggaccccggcag
cctgccgcccagggcaaggtgcgctcggagctgaagaacaagcagcagatcctgaagcag
cgcaaggcggcagccaagcagcgcttcctgcagcgcgggggcctcaagcgcctcaaggcc
aggaaccggcagcgggtgcaggagctgcggcagatggccttcgggcgccgcgtgggtgcc
accaagaagggcaagctccgaaagaggatgtag
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