Cygnus atratus (black swan): 118253162
Help
Entry
118253162 CDS
T09349
Symbol
USP13
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 13 isoform X1
KO
K11836
ubiquitin carboxyl-terminal hydrolase 5/13 [EC:
3.4.19.12
]
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cata01002
]
118253162 (USP13)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cata04121
]
118253162 (USP13)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cata04147
]
118253162 (USP13)
Enzymes [BR:
cata01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
118253162 (USP13)
Peptidases and inhibitors [BR:
cata01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
118253162 (USP13)
Ubiquitin system [BR:
cata04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
118253162 (USP13)
Exosome [BR:
cata04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
118253162 (USP13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UBA_7
zf-UBP_var
UBA
zf-UBP
UCH_1
UBA_4
UBA_8
Motif
Other DBs
NCBI-GeneID:
118253162
NCBI-ProteinID:
XP_035413158
LinkDB
All DBs
Position
9:complement(18955915..19002330)
Genome browser
AA seq
861 aa
AA seq
DB search
MQRAALFGGGDAQMAAGDLGELLVPYMPTIRVPKSGDRVYKTECAFSYDSPDSEGGLYVC
MNTFLGFGREHIERHYRKTGQCVYLHLKRHVREKVPGASGGALPKRRNAKLFLDLETNGD
LNGDDFEYEDEAKLVIFPDHYEISLPNIEELPALVTIACDALLSAKSPYRKQDPDSWEEE
LQASKHAKTLVQLDNGVRIPPSGWKCSKCDLRENLWLNLTDGSVLCGKWFFDGSGGNGHA
VEHYKETGYPLAVKLGTITPDGADVYSFDEEEPVLDPHIAKHLAHFGIDMLQMQVTENGL
RDNDIKPRVSEWEVIQESGVKLKPMYGPGYTGMKNLGNSCYLNAVMQTIFSIPEFQRAYV
GNLPRIYDYSPLDPTQDFNTQMAKLGHGLLSGQYSKPPMKSDLIEQVMKEEHKPQHNGIS
PRMFKAFISKGHPEFSSNRQQDAQEFFLHLINLVERNPVGSENPSDVFRFLVEERTQCCQ
SRKVRYTERVDYIMQLPVAMEAATNKDELIAYELKRREAEAARRAPPELVRAKIPFSACL
QAFSEPNNVEDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWIPKKLDVSVDM
PDFLDINHLRATGLQPGEEELPDIAPPIIIPDDPKDRTMNHFMESLDIDESSVMQLAEMG
FPLEACRKAVYYTGNLGAEVAFNWIIAHMEEPDFAEPLVVPAFGGATSSGAAGLGAVGLD
NQPPEEMVAIIISMGFQRNLAIQALKATNNNLERALEWIFGRPELEEESEPALDVMDMEN
HANANILAETGSEGPRIKDGPGRYELFGFISHMGTSTMSGHYVCHLKKEGRWVIYNDLRV
CASERPPKDQGYIYFYHRIPS
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgggccgcgctcttcggcggcggcgatgcgcagatggccgccggcgacctgggc
gagctgctcgtcccctacatgcccacgatccgggtgcccaagtcaggggaccgggtctac
aagacggagtgtgccttctcctacgactcgcccgattcagaaggaggtctctatgtgtgc
atgaacacgtttctgggatttggaagggaacacattgaaaggcattaccggaaaacagga
cagtgtgtatatttgcacctgaagcgacatgtgagagagaaggtaccaggggcatctggt
ggagctttaccaaaaaggaggaatgctaagctatttttagatctagagacaaatggtgat
ctgaacggtgatgactttgaatacgaagatgaagcaaaacttgttatatttcctgatcac
tatgaaatctcattaccaaacatagaagaattaccagcactggtgacgatagcttgtgat
gcactcctcagcgcaaaatcgccctacaggaagcaggaccctgactcctgggaagaagag
ctacaggcatctaaacatgccaaaacacttgtacagttagacaatggtgttagaattccc
cctagtggttggaagtgctcaaaatgtgacctgcgggagaatctgtggctaaacctgaca
gatggttctgtgttgtgtgggaagtggttctttgatggcagtggagggaatggacatgca
gtggagcactacaaggagacggggtatcccctggcagtgaaattgggaaccatcactcct
gatggagcagatgtctattcctttgatgaagaggagccagttttagatccgcacatagca
aagcatttggcacactttgggattgatatgctgcagatgcaagtgacagagaatggacta
agagataatgatataaaaccaagagtctcagaatgggaagtgattcaggaatctggagtg
aaactcaagcccatgtatggcccaggatacactggcatgaagaacctgggaaatagctgc
tacctcaatgctgtcatgcaaaccattttcagcatcccagagttccagagagcgtatgtg
ggaaaccttccaagaatatacgactactcccctcttgatccaacacaagatttcaacact
cagatggctaaactgggacatggcctcctttcaggccagtactctaagccacccatgaaa
tctgaccttattgaacaggtgatgaaagaagaacacaagccacaacacaatggaatatct
ccccgaatgtttaaggcttttataagtaaaggccacccagaattttcctctaatagacaa
caagacgcacaggagtttttcctacatcttataaatctagtagagaggaacccagtaggt
tcagaaaaccccagtgatgtcttccggttcctggtggaagaacgcacacaatgctgccag
tccagaaaggtgcgctacacagagagggtggactatatcatgcagttacctgttgcaatg
gaagcagcaacaaacaaagatgaattaattgcgtatgaactgaaaaggcgagaagcagaa
gctgcaaggagagctccaccagagcttgtccgtgccaagatcccatttagtgcatgcctg
caggctttttctgaaccaaacaacgtagaggacttctggagcagcgcccttcaagcaaaa
tctgcaggagttaagacttctcgttttgcttcatttcccgagtacttagttgtacagata
aagaagttcacctttggccttgattggatacccaaaaagcttgatgtttctgtagacatg
ccagactttctggatatcaaccaccttcgggccacgggtctccagccaggagaagaggaa
cttccagacattgctcctcccattatcattcctgatgatccgaaagatcgtacgatgaac
catttcatggagtctctagatattgatgagtcttcagttatgcaactggcagagatgggt
tttcctttggaagcatgtcggaaagccgtgtactatacaggcaacctgggtgctgaagtg
gctttcaactggatcattgcacatatggaagaaccagactttgctgagccattggttgta
cctgcgtttggaggagccacttccagtggagcggctggattaggggctgttgggctggat
aaccagcctcctgaagagatggttgccattatcatttccatgggcttccaaaggaaccta
gcaattcaagcgctgaaggcaacaaacaataatttggagcgtgcactggaatggatcttc
ggccgccctgaacttgaggaagagagtgagcctgctttggacgtgatggatatggagaac
catgctaatgcgaatatccttgcagagacaggatcagagggacccaggatcaaagatggg
cctggaagatatgagctgtttgggttcatcagccacatgggaacatccacaatgagtggc
cactatgtttgtcatctcaagaaagaaggaagatgggtgatctacaatgatcttagagtc
tgtgcctcggaacgacctccaaaagaccagggctacatttatttttaccacaggatacca
agttag
DBGET
integrated database retrieval system
