Cygnus atratus (black swan): 118253329
Help
Entry
118253329 CDS
T09349
Symbol
CHD5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X2
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cata03036
]
118253329 (CHD5)
Chromosome and associated proteins [BR:
cata03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
118253329 (CHD5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_Hrp3
DEAD
PHD_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
118253329
NCBI-ProteinID:
XP_035413459
LinkDB
All DBs
Position
21:673864..710242
Genome browser
AA seq
1951 aa
AA seq
DB search
MRGPAAGEELPEEADNDEDVSEEDDGVLEGLDEFFPEEQVAVQKKKKSKKLKDSKAAKIK
RRKKEGSNDEISDNEEEIEEKSESEGSDYSPNKKKKKKLKEKKDKKTKRKKKDEEDDDNE
DGGLKEPKSSAQLMEEWGLDDVDYIFSEEDYHTLTNYKAFSQFLRPLIAKKNPKIPMSKM
MTVLGAKWREFSANNPFKGSSAAAAAAAVAAAVETVTVAPPLAASPQQSALPAVIRKAKT
KEGKGPGVRKKIKGSKDGKKKGKGKKMAGLKFRFGGIPSKRKKGSSSEEEEREESDFDSA
SINSSSVRSECSAGLGKRGKRRRKKKRIEEGDGYETDHQDYCEVCQQGGEIILCDTCPRA
YHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKEDEDEEEEGGEEEEDDHMEFCRVCKDG
GELLCCDTCPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWTWKEPPAPLP
SALPAPDAELPLPLPKVLEGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRK
NDMDEPPAFDYGSGDEDSQREKRKNKDPQYAKMEERFYRYGIKPEWMMIHRILNHSFDKK
GDIHYLIKWKDLPYDQCTWEIDEIDIPYYENLKLLYWNHRELMLGEDTRPLKKLNKKGKK
LKEEKLEKPPETPLVDPTVKFDKQPWYIDATGGTLHPYQLEGLNWLRFSWAQGTDTILAD
EMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKE
SRSVIRENEFSFEDNAIRSGKKVFRMKKEAQIKFHVLLTSYELITIDQAVLGSIEWACLV
VDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFL
EEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILT
RNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGNSLVKSSGK
LMLLQKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDR
FNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMI
YRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKDDV
EGMVSQGQRIAMPDAVTPFSDTLSTKGGAMTPGMKKKHGGTPPGDNKDVDDSSVIHYDDA
AISKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPDYW
EKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDED
EDFEERPEGGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMP
PQDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLT
RIGVMSLVRKKVQEFEHVNGKYSTPDLILEGPESKKSSEIVSSDPNTPVPASPAHMHPGP
LTLAEKIETQLGFQEEKEQVEQKPKKVSDSQVPASAEKVESEEHQESCESKEKLKEEKQE
EGEKAEPSPEPLVKDEGIQEKEKPLEKPELNSSPGKGEDKEVKPEDTKVEEKEQSETQQN
GDKEEEEDGKKDDRNVNFRFMFNIADGGFTELHTLWQNEERAAISSGKIYDIWHRRHDYW
LLAGIVTHGYARWQDIQNDPRYVILNEPFKSEIHKGNYLEMKNKFLARRFKLLEQALVIE
EQLRRAAYLNMTQDPNHPAMALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQ
LEELLSDMKADVTRLPSMLSRIPPVAARLQMSERSILSRLTTRGGEPPVQQGSFGSSQIY
NNNFGPNFRGPGPGGIVNYSQMPLGPYVTDI
NT seq
5856 nt
NT seq
+upstream
nt +downstream
nt
atgcgggggccggcggcgggcgaggagctgccggaggaggcggacaacgacgaggacgtc
tcggaagaagatgatggggtcctggaaggactggatgagtttttcccagaagagcaagtt
gctgtgcagaaaaaaaagaaatccaagaagctgaaagacagcaaggctgccaaaatcaag
aggaggaagaaagaggggagcaatgatgaaatatcagacaacgaagaggagattgaggag
aaatctgagagtgaaggaagtgactattctcccaacaaaaagaaaaagaaaaaactgaag
gaaaagaaggataaaaaaacaaaacggaaaaagaaggatgaagaggacgatgacaatgag
gacggaggcctgaaggagcccaagagctcagcacagctgatggaagaatggggcctcgat
gatgtagattacattttctcagaagaagattaccatactctgactaattacaaggctttc
agccagtttctcaggcctctgatcgccaagaagaaccccaagatccccatgtccaagatg
atgactgtgcttggtgccaagtggcgagagttcagcgccaacaacccgttcaagggcagc
tcagcagctgcagccgcagcagccgtcgctgcagcagtggagaccgtcactgttgctcca
ccgctggctgccagccctcagcagtctgccttgcccgctgtcatcaggaaagctaaaacc
aaggagggcaagggtccaggtgtgcggaagaaaatcaagggctccaaagatgggaagaaa
aaggggaaggggaaaaagatggcaggcttgaaattccggtttggaggaatccccagcaaa
aggaaaaagggctcctctagtgaagaggaagaacgggaggaatccgacttcgacagtgcc
agcatcaacagctcctcagtgcgctctgagtgctcggctggcctggggaagagagggaag
aggaggagaaagaaaaagaggattgaagaaggggatggatacgagacagaccaccaggac
tactgtgaggtgtgccagcagggaggggagatcatcctgtgcgacacctgtccccgtgcc
taccacctcgtctgcctggaccctgagctggagaaggcccccgagggcaagtggagctgc
ccccactgtgagaaggaggggatccagtgggagccaaaggaggatgaggatgaggaagag
gaaggtggtgaagaagaggaggatgaccacatggagttctgccgtgtctgtaaggacgga
ggggagctgctgtgctgcgacacgtgcccatcttcctaccacctgcactgcctgaacccg
cccctgccagagataccaaacggtgaatggctctgccctcgctgtacatgccctccttta
aagggcaaagtgcaacgcatcctgcactggacctggaaggagcctccggccccgctcccg
tccgcgctgccggccccggatgcggagctgcctctcccgctgcccaaggtgctggagggc
atcccggagcgggagttcttcgtcaagtgggcagggctctcctactggcactgctcctgg
gtcaaggagctgcagctggagctctaccacacggtgatgtaccgcaactaccaaaggaag
aacgacatggatgagccgccggccttcgactacggctctggggacgaggacagccagagg
gagaagcggaagaacaaggacccgcagtatgccaagatggaggagcggttctaccgctac
ggcatcaagcccgagtggatgatgatccaccgcatcctgaaccacagcttcgataaaaag
ggagacattcattacctgatcaagtggaaagatctgccgtatgaccagtgcacctgggag
attgatgagatagacattccgtactacgaaaacctcaagctcctctactggaatcacagg
gagctgatgctgggggaagacacacgccctctaaagaagctgaacaagaaagggaaaaag
ctgaaggaggagaagctagaaaagcctccagaaactcctcttgttgatcctacagttaag
tttgacaaacagccgtggtacattgatgctacgggaggcactctccatccttaccagctg
gaagggctcaactggctgagattttcctgggcccaagggactgatacaatcctggctgat
gagatggggctggggaagacggtgcagaccatcgtgttcttgtattccctgtacaaggag
ggccactcgaaagggccgtacctggtcagtgccccactctccaccatcatcaactgggag
cgtgagtttgagatgtgggcgcctgacttctacgtcgtgacctacacaggggacaaagaa
agccggtcggtcatccgggaaaatgagttctcttttgaagacaatgccatccgcagtggg
aagaaggtcttcaggatgaagaaggaagcccaaatcaagttccatgtcctgctcacctcc
tatgagctgatcaccattgaccaggcggtgctgggctcgatagaatgggcctgtctggtg
gtggatgaagcacacaggctgaagaacaaccagtccaaattctttagagtattaaatagc
tacaagattgattacaagctgctgctcaccgggactccactccagaacaacttggaagag
ctcttccacttgctcaatttcctgactcctgagaggtttaataacctggaaggattcctg
gaggagtttgcagacatctccaaggaggaccagatcaaaaagctccatgacctgctgggt
ccccacatgctgcggcggctcaaggcggatgtgttcaagaacatgccggccaagacagag
ctgatagtgagagtggagctgagccaaatgcagaagaagtactacaagttcatactgaca
aggaattttgaagccctgaattcaaaaggtggagggaaccaggtctcactgctcaacatc
atgatggatctgaagaagtgctgtaatcacccgtacctcttccctgtggctgcggtggag
gctccagttctgcccaatggatcttatgatggaaattctttggttaaatcttctgggaaa
ctgatgctgctccaaaagatgctgaagaagttacgggatgggggtcacagagttctgatc
ttctcccagatgacaaagatgctggacttgctggaggacttcctggagtacgaaggctac
aagtatgagcggatagatgggggcatcaccggaggcttgcgccaggaagccatagacagg
tttaacgctcctggtgctcagcagttctgctttctcctctctacccgcgccggtggtctg
ggcataaaccttgctacagccgacacagtcattatttatgattctgactggaatccccac
aatgacatccaggcgttcagcagagctcaccgcatcgggcagaacaagaaggtgatgatc
taccgctttgtgacgagagcctctgtggaggagcggatcacccaggtggccaaaaggaag
atgatgctcacccacttggttgtccgtcctgggcttggctcaaagtcgggctccatgacc
aagcaggagctggatgacatcctcaagttcgggacagaagagctcttcaaggatgatgtg
gaaggcatggtgtctcagggacagcggatcgccatgccggatgctgtcacccctttctct
gacacgctgtcaaccaaagggggtgcgatgactcctggcatgaaaaaaaagcatggtggc
acccctccaggtgacaataaggatgtggatgacagcagtgtgatccactatgacgatgct
gctatctctaagcttctggaccgaaaccaggatgcaactgatgacactgagctgcagaac
atgaacgagtatctgagctcctttaaagtggcccagtatgttgtgagagaagaggatggt
gtggaggaggtggaacgtgagatcatcaagcaagaggagaatgtggaccccgactactgg
gagaagctactgcggcaccactacgagcagcagcaggaagatctggccaggaacctgggg
aaagggaagagaatccgcaagcaggtcaattacaatgatgcctcgcaggaggaccaagag
tggcaggacgagctctctgacaaccagtctgagtactccattggctctgaggatgaggat
gaagactttgaagagagaccagaaggtggcaggagacaatcacgaagacagctgaagagt
gaccgagacaaacctctccctcctttgctggcaagagttggggggaatattgaggttctc
gggttcaatgcccgtcagcgcaaggctttcctgaacgctatcatgcggtggggcatgcca
ccccaggatgccttcaactctcactggctggtccgggatctgcgagggaagagcgagaaa
gagttcagggcatacgtctctctgttcatgagacatttatgtgaacctggagcagatggt
gctgaaacctttgcagatggcgttccccgggaagggctgtcacgccagcacgtgctgact
cggataggagttatgtcactagtaaggaagaaggtccaggagtttgagcatgtcaacggg
aagtacagcaccccagatctgattcttgaaggcccagagagcaagaagtccagtgagatt
gtttcttcagatcccaacacccctgtcccggccagcccagcgcatatgcacccaggacct
cttacccttgcagaaaaaatagaaacacaacttggattccaagaggaaaaggaacaagtg
gagcagaaacccaagaaggtgtctgacagccaggtgcctgcaagtgctgagaaggtggaa
agtgaagagcaccaagaaagctgtgaaagcaaagagaaactgaaggaagagaaacaagag
gagggtgaaaaggctgagccttctcccgagcctttagtgaaagatgagggaattcaagaa
aaagagaagcctttggaaaagccggagttgaacagtagtcctggtaaaggggaggacaag
gaagtcaaaccagaggataccaaggtggaagagaaggagcaaagcgagactcagcaaaac
ggtgacaaagaagaagaagaggatggaaagaaggatgacagaaatgtgaacttcagattc
atgttcaacatcgctgatggtggctttacagagttgcacacgctgtggcagaatgaggaa
agagctgccatctcctccggcaagatctatgacatctggcaccgaagacacgactactgg
ctgttggcaggaattgtcactcatggctatgcccgctggcaggacatccagaatgacccg
cgctacgtgattctgaacgagcccttcaagtcggagatacacaaggggaactacctcgag
atgaagaacaagttccttgcccggcggttcaagttgctggagcaggccttggtgatagag
gagcagcttcgacgggctgcgtacctcaacatgactcaagaccccaatcacccggccatg
gcattgaacgcccgtctggctgaagtggagtgccttgctgagagccaccagcatctctcc
aaagagtcccttgctgggaacaagcctgcaaatgccgtcctgcacaaggtgctgaaccag
ctcgaggagctgctgagcgacatgaaggccgacgtgacgcgcctgccctccatgctgtcc
cgcatcccgcccgtggctgcgcggctgcagatgtcggagcgcagcatcctgagccgcctc
accacccgcgggggcgagcccccggtccagcagggttcctttggttcctcccagatctac
aacaacaactttgggccgaatttccgaggtcctgggcctggtgggattgttaactacagt
cagatgcctctaggaccatatgtgaccgatatttag
DBGET
integrated database retrieval system
